PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G038200.1.p

Common Name

GLYMA_13G038200, LOC102664863

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 313aa MW: 36341.1 Da PI: 5.9435

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G038200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.4	1.6e-13	10	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ l++ + +++G+ +W+ Ia+++ +++t+ q+ s+ qk+ Glyma.13G038200.1.p 10 RTRWTEEEHRLFLIGMERFGKSNWTNIAQHVVLTKTPSQVASHAQKF 56 78*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.418	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.22E-15	6	62	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-14	8	59	IPR006447	Myb domain, plants
SMART	SM00717	2.5E-7	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	8.3E-11	10	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.3E-9	10	52	IPR009057	Homeodomain-like
CDD	cd00167	3.95E-8	12	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MPQLQRRNTR TRWTEEEHRL FLIGMERFGK SNWTNIAQHV VLTKTPSQVA SHAQKFFLHH 60 SSVKQSKRQR KIPSIHDITL VSQPVSQHNP VNDQLAEKLH VVPSQQLTDF EGCLAIHLND 120 QLSRPPSTMA QDLQIQQLPH FVDHDSWVST PNQQVPKLPH NLLDQDKWIP PLGLQIHQFS 180 DLIDDHIDLA PLPDLLELPL PYLPLPHHLD QEKWIPPQDL QTHQLPHFMD HDNWVSTPNQ 240 QFPELPHHLL DQENWTPPLD LEIHQFSDFI DDPLDLDPLH DLLELPLPDL LLKLSHHLDQ 300 EKWIPPPNSP IS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G038200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006593764.1	0.0	probable transcription factor At5g61620 isoform X1
Refseq	XP_028196912.1	0.0	probable transcription factor At5g61620
TrEMBL	A0A0B2P884	0.0	A0A0B2P884_GLYSO; Transcription factor DIVARICATA
TrEMBL	I1LXA5	0.0	I1LXA5_SOYBN; Uncharacterized protein
STRING	GLYMA13G09060.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF36084	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-19	MYB family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G038200.1.p
Entrez Gene	102664863