PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G037100.1.p
Common NameGLYMA_13G037100, LOC100807048
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 592aa    MW: 66019.2 Da    PI: 4.7166
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G037100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS444.57e-1362215912374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lL++cA+ +s+g+ ++a++++++l++++s +gdp qR+aay++e+Laar+a s++ +y+al+++e +   s ++laa+++++ev+P++
  Glyma.13G037100.1.p 221 KQLLYDCARILSEGNEQEATSMINKLRQMVSIQGDPSQRIAAYMVEGLAARVATSGKCIYQALRCKEPP---SNDRLAAMQILFEVCPCF 307
                          589*****************************************************************9...9***************** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefn 179
                          kf++++aN aI eav  e++vHiiDfdisqG+Q+++L+q+Las p+ pp++R+Tgv++pes+  s   ++ +g+rL+k+Aeelg+pfef+
  Glyma.13G037100.1.p 308 KFGYIAANGAIAEAVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRPPHVRLTGVDDPESVqrSIGGINIIGQRLEKLAEELGLPFEFR 397
                          ************************************************************99888899********************** PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                          + va+ +++++ ++L+++pgEal+Vn+++qlh++ de+vs+ +erd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+
  Glyma.13G037100.1.p 398 A-VASGTSNVTQSMLDCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFVEAYNYYSAVFN 486
                          *.7*************************************************************************************** PP

                 GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
                          +l+a+lpres++r++vEr++l+++ivn+vaceg+er+er e ++kWr+rl++aGF+p p+s+++ + ++ l+ k + d ++++ee g l 
  Glyma.13G037100.1.p 487 TLDATLPRESQDRMNVERQCLAKDIVNIVACEGEERIERYEVAGKWRARLSMAGFTPSPMSTNVREAIRKLIIKQYCDKFKIKEEMGGLH 576
                          ****************************************************************************899*********** PP

                 GRAS 360 lgWkdrpLvsvSaWr 374
                          +gW+d++L+++SaW+
  Glyma.13G037100.1.p 577 FGWEDKNLIVASAWK 591
                          **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.947194571IPR005202Transcription factor GRAS
PfamPF035142.4E-133221591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSLVISTELA DTSYGNAKLY TLKGTDVTPD LSSHNFAPDK HRNMYMTKSY SCESYEKYFH  60
DSPTEELIEP SSSSISGNSV HPDGASSYLL RASSGASVIV NNPFDTSIWS TRHRDAYQSN  120
SVSDFVENGS PDGLDFDGEM RLKLQELERA LLSDEEEEEQ GIFETVQSME IDPDMVEWAN  180
PLQDMLLHDS PKESSSSDSS NLSSISSTTK DTSQNSPQTP KQLLYDCARI LSEGNEQEAT  240
SMINKLRQMV SIQGDPSQRI AAYMVEGLAA RVATSGKCIY QALRCKEPPS NDRLAAMQIL  300
FEVCPCFKFG YIAANGAIAE AVRDEKKVHI IDFDISQGTQ YITLIQTLAS MPGRPPHVRL  360
TGVDDPESVQ RSIGGINIIG QRLEKLAEEL GLPFEFRAVA SGTSNVTQSM LDCRPGEALV  420
VNFAFQLHHM RDETVSTVNE RDQLLRMVKS LNPKLVTVVE QDMNTNTSPF LPRFVEAYNY  480
YSAVFNTLDA TLPRESQDRM NVERQCLAKD IVNIVACEGE ERIERYEVAG KWRARLSMAG  540
FTPSPMSTNV REAIRKLIIK QYCDKFKIKE EMGGLHFGWE DKNLIVASAW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6922759026378Protein SCARECROW
5b3h_A4e-6922759025377Protein SCARECROW
5b3h_D4e-6922759025377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202770.0epicotyl| root| seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G037100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311600.0KT031160.1 Glycine max clone HN_CCL_175 GRAS transcription factor (Glyma14g27290.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541840.10.0scarecrow-like protein 1
RefseqXP_014620736.10.0scarecrow-like protein 1
RefseqXP_014620737.10.0scarecrow-like protein 1
RefseqXP_028196487.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A0B2S1600.0A0A0B2S160_GLYSO; Scarecrow-like protein 1
TrEMBLI1LXB00.0I1LXB0_SOYBN; Uncharacterized protein
STRINGGLYMA13G09220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Representative plantOGRP82621116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]