PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G034100.1.p | ||||||||
Common Name | GLYMA_13G034100, LOC100817554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24394.8 Da PI: 8.4281 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.4 | 3.8e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngilKKA+E+ vLCda+v++iif+ +gk+++y+s Glyma.13G034100.1.p 9 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 83.4 | 4.9e-28 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 y+k+sgk+l++ak+e+l+ e+++Lkke++++q e+Rhl+G+d++sL++keL+ Le++Le++l ++R+k+++++++ ++ + e+e++e Glyma.13G034100.1.p 71 YHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRHLKGDDINSLNYKELMALEDALETGLVSVREKQMDVYRMLRRNDKILEEENREL 160 7999************************************************************************************** PP K-box 91 nkaLrkkle 99 n +++l+ Glyma.13G034100.1.p 161 NFLWQQRLA 169 *98888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.721 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-34 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.18E-40 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 1.7E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.7E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-19 | 82 | 161 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.267 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEITVLCD AQVSLIIFAA SGKMHDYISP 60 STTLIDILER YHKTSGKRLW DAKHENLNGE IERLKKENDS MQIELRHLKG DDINSLNYKE 120 LMALEDALET GLVSVREKQM DVYRMLRRND KILEEENREL NFLWQQRLAE EGAREVDNGF 180 DQSVRDYNSH MPFAFRVQPM QPNLQERI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 8e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 8e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 8e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 8e-17 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22551 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G034100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095368 | 0.0 | BT095368.1 Soybean clone JCVI-FLGm-7A22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241026.1 | 1e-153 | uncharacterized protein LOC100817554 | ||||
Refseq | XP_028197150.1 | 1e-153 | floral homeotic protein GLOBOSA-like | ||||
Swissprot | Q0HA25 | 1e-115 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A0B2PBU9 | 1e-152 | A0A0B2PBU9_GLYSO; Floral homeotic protein GLOBOSA | ||||
TrEMBL | C6TCS1 | 1e-152 | C6TCS1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G09660.1 | 1e-153 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 | Representative plant | OGRP5302 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 3e-85 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G034100.1.p |
Entrez Gene | 100817554 |
Publications ? help Back to Top | |||
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