PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.13G032200.1.p

Common Name

GLYMA_13G032200, LOC100797847

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 355aa MW: 39463.9 Da PI: 7.5677

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G032200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	43	90	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl Glyma.13G032200.1.p 43 RGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 90 89****************************99**********97 PP
2	Myb_DNA-binding	46.6	8.2e-15	101	141	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Glyma.13G032200.1.p 101 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 141 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-22	34	92	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.322	38	90	IPR017930	Myb domain
SuperFamily	SSF46689	6.6E-29	40	137	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-13	42	92	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-15	43	90	IPR001005	SANT/Myb domain
CDD	cd00167	7.08E-11	45	90	No hit	No description
PROSITE profile	PS51294	24.404	91	145	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-24	93	146	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	95	143	IPR001005	SANT/Myb domain
CDD	cd00167	1.35E-11	101	141	No hit	No description
Pfam	PF00249	1.3E-13	101	141	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MRNPSSTTTT AATTTTKTKV KNNSNNNIGS NNSPCCNKVG LKRGPWTPEE DEVLANYIKK 60 EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA PDEEDLILRL HRLLGNRWSL 120 IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLNP ASINVPSSST TSSKPLPMII 180 TNNHINPVHH DLTNMFNQGV HQVHHLGQHH HQPPASNPYD NHNPVPAAAT GDVSAMAFMD 240 NNNEDCNDDI NINYYSDDVF SSFLNSLIND DAFAAQQHHV QTEIPTPSER SIMNPLPCDD 300 RVGGHLGSIA TASAAQGYDD ELGVLWESPL VNAATFSQHV DDHITKRVHD HHNQ*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MRNPSSTTTT AATTTTKTKV KNNSNNNIGS NNSPCCNKVG LKRGPWTPEE DEVLANYIKK  60
EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA PDEEDLILRL HRLLGNRWSL  120
IAGRIPGRTD NEIKNYWNTH LSKKLISQGI DPRTHKPLNP ASINVPSSST TSSKPLPMII  180
TNNHINPVHH DLTNMFNQGV HQVHHLGQHH HQPPASNPYD NHNPVPAAAT GDVSAMAFMD  240
NNNEDCNDDI NINYYSDDVF SSFLNSLIND DAFAAQQHHV QTEIPTPSER SIMNPLPCDD  300
RVGGHLGSIA TASAAQGYDD ELGVLWESPL VNAATFSQHV DDHITKRVHD HHNQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-25	41	145	5	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.59361	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Siliques. {ECO:0000269\|PubMed:9839469}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G032200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB597933	0.0	AB597933.1 Glycine max W2 mRNA for R2R3 MYB transcription factor, complete cds, cultivar: Nezumisaya.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006593823.1	0.0	transcription repressor MYB5
Refseq	XP_028196423.1	0.0	transcription repressor MYB5-like
Swissprot	Q38850	6e-84	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A0B2P7J7	0.0	A0A0B2P7J7_GLYSO; Transcription repressor MYB5
TrEMBL	K7LY69	0.0	K7LY69_SOYBN; Uncharacterized protein
STRING	GLYMA13G09980.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	6e-78	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Glyma.13G032200.1.p
Entrez Gene	100797847

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]