PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G237800.2.p

Common Name

GLYMA_12G237800, LOC100794446

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 353aa MW: 39832.7 Da PI: 7.7289

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G237800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.2e-07	191	210	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C+k+F+r nL+ H+ Glyma.12G237800.2.p 191 FPCPVCSKTFNRYNNLQMHM 210 89*****************9 PP
2	zf-C2H2	15.4	5.3e-05	275	297	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F k + ++H +++ Glyma.12G237800.2.p 275 YMCRKCGKAFAVKGDWRTHEKNC 297 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.51E-6	187	213	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-6	191	210	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.616	191	218	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.9E-5	191	210	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.034	191	213	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.02E-6	259	295	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-6	271	295	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.974	275	295	IPR007087	Zinc finger, C2H2
SMART	SM00355	40	275	295	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MTDPQSNLFH EWFNFMLLHP HYSSSQSNYP FANNYSNNNR FGIQLQQGAA SSSSSSFYAA 60 PPSSPPLREA LPLINKISLK SSEQHQQNEP SSNVVEEKEE DKNKVDNNKH HESGEDGDEE 120 TVTVALHIGL PRMDTSSSDL GPSRVVSTTC MEISEKEEVN MISKHPLDNR LNKGQYWIPT 180 PSQILIGPTQ FPCPVCSKTF NRYNNLQMHM WGHGSQYRKG PDSLKGTQPT AMLRLPCFCC 240 APGCKHNIDH PRARPLKDFR TLQTHYKRKH GIKPYMCRKC GKAFAVKGDW RTHEKNCGKI 300 WYCLCGSDFK HKRSLKDHIK AFGFGHGSFG IDCLQEEDEA ASDIEHDGES SM*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MTDPQSNLFH EWFNFMLLHP HYSSSQSNYP FANNYSNNNR FGIQLQQGAA SSSSSSFYAA  60
PPSSPPLREA LPLINKISLK SSEQHQQNEP SSNVVEEKEE DKNKVDNNKH HESGEDGDEE  120
TVTVALHIGL PRMDTSSSDL GPSRVVSTTC MEISEKEEVN MISKHPLDNR LNKGQYWIPT  180
PSQILIGPTQ FPCPVCSKTF NRYNNLQMHM WGHGSQYRKG PDSLKGTQPT AMLRLPCFCC  240
APGCKHNIDH PRARPLKDFR TLQTHYKRKH GIKPYMCRKC GKAFAVKGDW RTHEKNCGKI  300
WYCLCGSDFK HKRSLKDHIK AFGFGHGSFG IDCLQEEDEA ASDIEHDGES SM*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G237800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539640.1	0.0	zinc finger protein WIP2
Refseq	XP_014620599.1	0.0	zinc finger protein WIP2
Refseq	XP_028193838.1	0.0	zinc finger protein WIP2-like
Refseq	XP_028193839.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-121	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0B2QDT4	0.0	A0A0B2QDT4_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBL	K7LWM6	0.0	K7LWM6_SOYBN; Uncharacterized protein
STRING	GLYMA12G36660.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G237800.2.p
Entrez Gene	100794446

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]