PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G236800.4.p
Common NameGLYMA_12G236800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 293aa    MW: 32873.6 Da    PI: 9.9723
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G236800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.6e-32137193158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rkpylheSRh hA+rR+Rg+gGrF
  Glyma.12G236800.4.p 137 EEPVYVNAKQYHGILRRRQSRAKAEIEKKV-IKNRKPYLHESRHLHAMRRARGNGGRF 193
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-37135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.559136196IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-27138193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-24139161IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-24170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MPGKPDTDDW RVERGEQIQF QSSIYSHHQP WWRGVGENAS KSSSDDQLNG SIVNGGGVAK  60
EYQNIKHAML STPFTMEKHL APNPQMELVG HSVVLTSPYS DAQYGQILTT YGQQVMINPQ  120
LYGMHHARMP LPLEMEEEPV YVNAKQYHGI LRRRQSRAKA EIEKKVIKNR KPYLHESRHL  180
HAMRRARGNG GRFLNTKKLE NNNSNSTSDK GNNTRANAST NSPNTQLLFT NNLNLGSSNV  240
SQATVQHMHT EQSFTIGYHN GNGLTALYRS QANGKKEGNC FGKERDPNGD FK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21137212274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.557400.0cotyledon| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G236800.4.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976640.0BT097664.1 Soybean clone JCVI-FLGm-22I24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349754.10.0nuclear transcription factor Y subunit A-11
RefseqXP_028195401.10.0nuclear transcription factor Y subunit A-1-like
SwissprotQ9LXV53e-41NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLI1LVD00.0I1LVD0_SOYBN; Uncharacterized protein
STRINGGLYMA12G36540.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.47e-36nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]