PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G236800.2.p
Common NameGLYMA_12G236800, LOC100782085
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 304aa    MW: 34062.8 Da    PI: 9.9606
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G236800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.53.8e-32148204158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k+rkpylheSRh hA+rR+Rg+gGrF
  Glyma.12G236800.2.p 148 EEPVYVNAKQYHGILRRRQSRAKAEIEKKV-IKNRKPYLHESRHLHAMRRARGNGGRF 204
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.2E-37146207IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.559147207IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-27149204IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24150172IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860152172IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24181204IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MPGKPDTDDW RVERGEQIQF QSSIYSHHQP WWRGVGENAS KSSSDDQLNG SIVNGITRSE  60
TNDKSGGGVA KEYQNIKHAM LSTPFTMEKH LAPNPQMELV GHSVVLTSPY SDAQYGQILT  120
TYGQQVMINP QLYGMHHARM PLPLEMEEEP VYVNAKQYHG ILRRRQSRAK AEIEKKVIKN  180
RKPYLHESRH LHAMRRARGN GGRFLNTKKL ENNNSNSTSD KGNNTRANAS TNSPNTQLLF  240
TNNLNLGSSN VSQATVQHMH TEQSFTIGYH NGNGLTALYR SQANGKKEGN CFGKERDPNG  300
DFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21148223274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.557400.0cotyledon| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G236800.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976640.0BT097664.1 Soybean clone JCVI-FLGm-22I24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349754.10.0nuclear transcription factor Y subunit A-11
RefseqXP_028195401.10.0nuclear transcription factor Y subunit A-1-like
TrEMBLA0A0B2QCX30.0A0A0B2QCX3_GLYSO; Nuclear transcription factor Y subunit A-1 isoform A
TrEMBLA0A0R0H9K20.0A0A0R0H9K2_SOYBN; Uncharacterized protein
STRINGGLYMA12G36540.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.49e-37nuclear factor Y, subunit A1