PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G230200.1.p
Common NameGLYMA_12G230200, LOC100781722
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 273aa    MW: 30272.1 Da    PI: 8.6714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G230200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-0583105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C k F++   L  H+++H
  Glyma.12G230200.1.p  83 YTCSFCRKEFKSAQALGGHMNVH 105
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-680109No hitNo description
Gene3DG3DSA:3.30.160.605.0E-481107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.0E-583106IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.34483110IPR007087Zinc finger, C2H2
SMARTSM003550.00383105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKRNGLMKDY THDHSCVNKN PTTTKDFSHV VANCFNNNQM AKEFWECSSI SNINKSHHHN  60
IHSNNNIADQ DYVNGFPWPP RSYTCSFCRK EFKSAQALGG HMNVHRRDRA RLRQSSPPTH  120
EVQGQAAGPI RLNLNLNPNN NSASSSSLSL LPPPPSSSSA TTTTLKPVVT CTLPLFVSPT  180
PPSPSSELKR WVVVDGIVLN PLSIMTTPEH YSKSKIPESF SAGVGEYHDH AFAREDGCKM  240
LKKGEILRMD LEIGLPRGYD LDLELRLGTT YS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1278105229superman protein
2l1o_A2e-1278105229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G230200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362211e-110AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539621.10.0transcriptional regulator SUPERMAN
TrEMBLK7LWH60.0K7LWH6_SOYBN; Uncharacterized protein
STRINGGLYMA12G35930.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-23C2H2 family protein