PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G228300.1.p
Common NameGLYMA_12G228300, LOC100802063
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 378aa    MW: 39903.6 Da    PI: 6.711
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G228300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.91.1e-35241302103
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssasnsss 87 
                          +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+ +    ++ +a + ++es++ + + + +
  Glyma.12G228300.1.p  24 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLppwkPTLPAPQNDDESDKLNPNPNPI 113
                          79**************************************************************76663333322233334444333333 PP

                  TCP  88 gkaaksaa.kskksqks 103
                          + + ++a+  +++++++
  Glyma.12G228300.1.p 114 PIHHPDAEiLHQFNEND 130
                          33333333244444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-312489IPR005333Transcription factor, TCP
PROSITE profilePS5136933.6682684IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVRASGGGGG EIVEVEGGHI VRSTGRKDRH SKVCTAKGPR DRRVRLSAHT AIQFYDVQDR  60
LGYDRPSKAV DWLINKAKSA IDQLAHLPPW KPTLPAPQND DESDKLNPNP NPIPIHHPDA  120
EILHQFNEND TENLRCDGGG GSSYLPMDND AIRSFFPTTT SSLVHFQSYP PDLLSRTSSQ  180
DLRLSLQSLQ DPVLLHQNHH NNEHVLFAGT GFENMVAWNS SSNNNNNTAS NDTCGGGGGG  240
GGGGGGGGFV FNAPSTLTGP ATVASPAVVF GHGLGQGQYF TQRGPLQSSN SPSVRAWIDA  300
PSFVAAAADH RHHHHHYLSP AAAAAALVYQ SAPSTAAFAA APGGFSGFRV PAQIQGEEEH  360
DGGVSDKPSS ASSDSHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-203184154Putative transcription factor PCF6
5zkt_B2e-203184154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.505400.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G228300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540480.10.0transcription factor TCP4
TrEMBLI1LV510.0I1LV51_SOYBN; Uncharacterized protein
STRINGGLYMA12G35720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.17e-44TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3