PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G226000.1.p

Common Name

GLYMA_12G226000, LOC100305703

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SBP

Protein Properties

Length: 188aa MW: 21007.4 Da PI: 8.6657

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G226000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	66	142	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e C adl+ ak+yhrrhkvCe hskap+v+v+gl+qrfCqqCsrf el efDe+krsCrrrLa+hnerrrk++a Glyma.12G226000.1.p 66 CQAEMCGADLTVAKRYHRRHKVCELHSKAPSVMVAGLRQRFCQQCSRFQELAEFDEAKRSCRRRLARHNERRRKSNA 142 **************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-34	58	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.342	63	140	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.27E-36	64	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-31	66	139	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MEIKSRERIQ VSIEKVRRDS TVEVEDEEEE DESVVGGEGG LAEDEKKKGG GGSGRRGSSG 60 VSPPSCQAEM CGADLTVAKR YHRRHKVCEL HSKAPSVMVA GLRQRFCQQC SRFQELAEFD 120 EAKRSCRRRL ARHNERRRKS NAETCNEGCS GSKGQHPTES HCRNADVWGR IQMNIAKNSG 180 YNSFHIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-34	54	139	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.38617	0.0	flower

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G226000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098928	0.0	BT098928.1 Soybean clone JCVI-FLGm-16D18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003540473.1	1e-135	squamosa promoter-binding-like protein 3
Refseq	XP_028194818.1	1e-135	squamosa promoter-binding-like protein 3
Swissprot	Q38741	1e-39	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A445HTX4	1e-133	A0A445HTX4_GLYSO; Squamosa promoter-binding protein 1
TrEMBL	I1LV25	1e-133	I1LV25_SOYBN; Uncharacterized protein
STRING	GLYMA12G35460.1	1e-134	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153
Representative plant	OGRP97	17	230

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	9e-18	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	Glyma.12G226000.1.p
Entrez Gene	100305703

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]