PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G221500.1.p | ||||||||
Common Name | GLYMA_12G221500, Glyma12g35000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 38981.8 Da PI: 8.1915 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF Ptdeel+v+yL++kv+g++++l +i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk Glyma.12G221500.1.p 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102 79**************************99.88***************7777799*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Glyma.12G221500.1.p 103 IITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 9999.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-66 | 10 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.179 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-26 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGVPEKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP 60 SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLL DSSRKNTGTK LDDWVLCRIY KKNSSAQKAV QNGVVPSNEH 180 TQYSNGSSSS SSSQLDDVLE SLPAIDERCF PMPRVNTLQQ QQHEEKVNVQ NLGEGGLLDW 240 TNPSVLNSVV DFVSGNNNHN QLVQDQTQGM VNYNACNDLY VPTLCHVGTS VPQKMEEEVQ 300 SGVRNQRVQN NSWFLQNDFT QGFQNSVDTS GFKYPVQPVG FGFRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26857 | 0.0 | flower| hypocotyl| leaf| meristem| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abscisic acid-mediated stomatal closure (PubMed:25005917). Regulates the expression of NCED1, a gene involved in the biosynthesis of abscisic acid (ABA) (PubMed:25005917). Required for the stomatal closure induced by the bacterial pathogen Pseudomonas syringae pv tomato DC3000, but not for stomatal reopening (PubMed:25005917). {ECO:0000269|PubMed:25005917}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G221500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), dehydration and wounding. {ECO:0000269|PubMed:25005917}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031217 | 0.0 | KT031217.1 Glycine max clone HN_CCL_1 NAC transcription factor (Glyma12g35000.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238424.2 | 0.0 | NAC domain protein NAC4 | ||||
Swissprot | Q9SQL0 | 1e-136 | JA2_SOLLC; NAC domain-containing protein JA2 | ||||
TrEMBL | A0A0K2CTP6 | 0.0 | A0A0K2CTP6_SOYBN; NAC transcription factor | ||||
STRING | GLYMA12G35000.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4429 | 33 | 60 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 1e-120 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G221500.1.p |
Publications ? help Back to Top | |||
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