PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G221400.1.p | ||||||||
Common Name | GLYMA_12G221400, LOC100784578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 41277.2 Da PI: 9.1364 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.9 | 2e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk Glyma.12G221400.1.p 15 LPPGFRFHPTDEELVVHYLKKKTASAPLPV-AIIAEVDLYKFDPWELPAKAAFGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDK 103 79****************************.88***************988899************************************ PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +vl++ ++++vg+kk Lvfy g+ p+g kt+W+mheyrl Glyma.12G221400.1.p 104 PVLTSgGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRL 142 ***9977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-64 | 9 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.781 | 15 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MGSTDSSSGS QQPNLPPGFR FHPTDEELVV HYLKKKTASA PLPVAIIAEV DLYKFDPWEL 60 PAKAAFGEQE WYFFTPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPRG IKTNWIMHEY RLADNKPNNR PPPGCDLGNK KNTLRLDDWV LCRIYKKSNT 180 HRSPMEHERE DSMDDMIGGI PPSINVGHMS ARFHHLSKMT TAYNSGAMLE NEHNLLEGMM 240 IGNNNGGMNT TTTATTTPGA MSSHLGGSKA ELSFVPTMTH SSNTSKRTLS SLYWNDEDVT 300 GTSSSNRRFN LESGDNNNHG SVVRADQENG TASSIATLLN QLPQTPSLHQ QSMLGSIGDG 360 LLRTTYQIPG MNWYA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-76 | 1 | 179 | 1 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22851 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. | |||||
Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G221400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661916 | 0.0 | EU661916.1 Glycine max NAC domain protein (NAC16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540450.1 | 0.0 | NAC transcription factor 56 | ||||
Refseq | XP_028192820.1 | 0.0 | NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-122 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A445HU21 | 0.0 | A0A445HU21_GLYSO; NAC transcription factor 56 | ||||
TrEMBL | I1LUX8 | 0.0 | I1LUX8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G34990.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-119 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G221400.1.p |
Entrez Gene | 100784578 |
Publications ? help Back to Top | |||
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