PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G216100.1.p
Common NameGLYMA_12G216100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 562aa    MW: 62597.5 Da    PI: 5.3658
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G216100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.49.6e-1202005591373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+a+s+++++  ++l+ r ++ +s +g+p+qRl ay++e+L ar + s++++y+al+++e +    +e l++++l++e++P+
  Glyma.12G216100.1.p 200 LKQLLIACAKALSENNMNDFDQLVGRAKDAVSINGEPIQRLGAYMVEGLVARTQASGNSIYHALRCKEPE---GDELLTYMQLLFEICPY 286
                          689******************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          lkf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + +  e +g+rLa + e++g+p+ef
  Glyma.12G216100.1.p 287 LKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGPEVVGKRLALMSEKFGIPVEF 376
                          ************************************************************99999999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +  v     d++ e+L+++pgEal            desv+++++rd +L+lv+slsPkv ++veqe+++n+++F++rf+e+l+yy a+f
  Glyma.12G216100.1.p 377 HG-VPVFAPDVTREMLDIRPGEALG----------SDESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIF 455
                          **.688899*************996..........45666677899******************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+s+eri+vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g++
  Glyma.12G216100.1.p 456 ESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLKMAGFQQCPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAM 544
                          *************************************************************************9999.66********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          +lgWkdr+L+s+SaW
  Glyma.12G216100.1.p 545 LLGWKDRNLISASAW 559
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.152174541IPR005202Transcription factor GRAS
PfamPF035143.3E-117200559IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MDSQQLFSFG GVTSAGLPYM SSFPTVPSLP NSLLRSLKYD TGNSPNSPFS TYFDSDTLSA  60
LSDGQEQYSP GEILSGVSSS LETNHYMYNR SISTLDSFPL YSDRNSLLQN ASSNQKIQHA  120
LLELETALMA PDDDQVTTPN TLAERHRSWN NENHVSQHNT QAQPSYATGN RQSSEVVHVE  180
KRQKLMEEEA TLEAFPPNNL KQLLIACAKA LSENNMNDFD QLVGRAKDAV SINGEPIQRL  240
GAYMVEGLVA RTQASGNSIY HALRCKEPEG DELLTYMQLL FEICPYLKFG YMAANGAIAE  300
ACRNEDRIHI IDFQIAQGTQ WMTLLQALAA RPGGAPHVRI TGIDDPVSKY ARGDGPEVVG  360
KRLALMSEKF GIPVEFHGVP VFAPDVTREM LDIRPGEALG SDESVHVSNP RDGLLRLVRS  420
LSPKVTTLVE QESNTNTTPF FNRFIETLDY YLAIFESIDV TLPRDSKERI NVEQHCLARD  480
IVNIIACEGK ERVERHELFG KWKSRLKMAG FQQCPLSSYV NSVIRSLLRC YSEHYTLVEK  540
DGAMLLGWKD RNLISASAWH C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6020755926378Protein SCARECROW
5b3h_A1e-6020755925377Protein SCARECROW
5b3h_D1e-6020755925377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.44640.0flower| leaf| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G216100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0986660.0BT098666.1 Soybean clone JCVI-FLGm-16P3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194506.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0R0HH940.0A0A0R0HH94_SOYBN; Uncharacterized protein
STRINGGLYMA12G34420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-165GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]