PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G212300.1.p
Common NameGLYMA_12G212300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 264aa    MW: 28553.8 Da    PI: 6.1812
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G212300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.5e-2977135259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ +++tY  eHnh+
  Glyma.12G212300.1.p  77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTKLIVTYAYEHNHS 135
                          69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-3169137IPR003657WRKY domain
SuperFamilySSF1182901.7E-2573137IPR003657WRKY domain
SMARTSM007743.0E-3576136IPR003657WRKY domain
PROSITE profilePS5081131.69777137IPR003657WRKY domain
PfamPF031063.8E-2578134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MHHRRFSKLI HVADPDEPES GPEPASEAGP ASPSSGEDTK TEAPSPKKRR EMKKRVVTIP  60
IGDVDGSKSK GENYPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRVD  120
PTKLIVTYAY EHNHSLPFPK SNSSAASAAV SDGAAVLPIE SAARFPPEEE MTVFATDSDL  180
ELAGDAAVLL SHHHHHFGWF DDVASTGVLE SPICGEVDDV AVPMREEDES LFADLGELPE  240
CSAVFRRRNI PATSAIRCGG ITG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-18771371574WRKY transcription factor 1
5w3x_B2e-1854137679Disease resistance protein RRS1
5w3x_D2e-1854137679Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.75900.0hypocotyl| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G212300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3753510.0EU375351.1 Glycine max transcription factor (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237587.20.0WRKY transcription factor 16
SwissprotQ93WV52e-70WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLI1LUP50.0I1LUP5_SOYBN; Uncharacterized protein
STRINGGLYMA12G33990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.24e-66WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]