PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G208400.1.p
Common NameGLYMA_12G208400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 321aa    MW: 36640.8 Da    PI: 6.4414
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G208400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.58.9e-11191234548
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                          kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  +
  Glyma.12G208400.1.p 191 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPR 234
                          899*********************************98877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.8E-14187251IPR004827Basic-leucine zipper domain
PfamPF077162.5E-9188236IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.622189241IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.1E-11191245No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-11191242No hitNo description
CDDcd147032.47E-23192242No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAQLPPKIPN MSPSWPDFSS HQQKMQLPPL NNNGTITNNY HQHNQNPSWV DEFLDFSSAR  60
RGVHRRSVSD SITYLDSPVK CGGNKNNNNN ENEFDKFDDE QFMSMFTDEV VLSGVPLPPP  120
TTLSSSNPSS PYDQNFINDE KEKKEEEEEH HHHHQLKNEA DEVESQCKQE IMQLPNDTNT  180
CSSSERITDP KRVKRILANR QSAQRSRVRK LQYISELERS VTSLQAEVSV LSPRVAFLDH  240
QRLLLNVDNS ALKQRIAALA QDKIFKDAHQ EALKREIERL RQVYYQQSLK KMENAAGSPL  300
PSPKPICDAQ TEKEAQLLNA *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.286480.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G208400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969000.0BT096900.1 Soybean clone JCVI-FLGm-25J24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241568.10.0transcription factor bZIP58
SwissprotQ9M2K41e-118BZP61_ARATH; Basic leucine zipper 61
TrEMBLC6TGZ00.0C6TGZ0_SOYBN; Uncharacterized protein
STRINGGLYMA12G33600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42380.28e-98bZIP family protein
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]