PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G205700.1.p
Common NameGLYMA_12G205700, Glyma12g33320.1, LOC100787049
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 393aa    MW: 43826.3 Da    PI: 8.6114
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G205700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06120140526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ + r G C++Gd C +aHg
  Glyma.12G205700.1.p 120 VCPEYPR-GGCSRGDACEYAHG 140
                          7999999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0027115141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.305116142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4119142IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4120140IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.23150174IPR000571Zinc finger, CCCH-type
SMARTSM003567.8150173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSSVCAKQHK FYPSHQLLSP KKTLREIDIP PRKLLTRRAA ACVGGTDVYS SEETMLQKFL  60
PSNDSDEDDP YSSDHFRMFE FKVRRCTRSR SHDWTDCPFA HPGEKARRRD PRRYHYSGTV  120
CPEYPRGGCS RGDACEYAHG VFECWLHPSR YRTEACKDGR NCKRKVCFFA HTPRQLRILP  180
VTTSSPSSND MPCKKNLNKL LNHASKSNNN NNNNCCLFCH CGASSSVSPT STLFGMSHFS  240
PPVSPSSSSS PPPSPLKPRS VVSPISPISR YSAVNMNPHH GVVSYKDMFA ELVNSLEGLS  300
FNEGSPVSGA KAPNFPWLDV SLEEQQQQQN PFIVSSFGCE DKQNQFIFSP PSIQTPTNGK  360
FCRNRFMGND NKVVGGADVN GPDLAWVNEL LM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.179400.0cotyledon| pod| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G205700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311550.0KT031155.1 Glycine max clone HN_CCL_143 C3H-type 1 Zn transcription factor (Glyma12g33320.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540372.30.0zinc finger CCCH domain-containing protein 2
TrEMBLI1LUH80.0I1LUH8_SOYBN; C3H-type 1 Zn transcription factor
STRINGGLYMA12G33320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.14e-76C3H family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]