PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G203100.1.p
Common NameGLYMA_12G203100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 423aa    MW: 47873.4 Da    PI: 6.2297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G203100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-19223273256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Glyma.12G203100.1.p 223 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 273
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.28E-34222282No hitNo description
SuperFamilySSF541716.54E-23223281IPR016177DNA-binding domain
PROSITE profilePS5103222.998223280IPR001471AP2/ERF domain
SMARTSM003801.5E-40223286IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32223281IPR001471AP2/ERF domain
PRINTSPR003677.1E-11224235IPR001471AP2/ERF domain
PfamPF008472.4E-12224273IPR001471AP2/ERF domain
PRINTSPR003677.1E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAAANSGKFD VGDETHKNSR KGSESQDWEI EKGKCVDCSS SQRRQWKPVF DDVSISYNRP  60
FKKIRSPDRQ NTNQSSSSSS SSSSSSSIPF QPSPLSNPPS RIVFPFAFDG SQQHPMQFPH  120
QFGTTNPPFP HPSLQNQQHQ MISFGSSQQH NNLAYPPIIA SDSSSLLHQH HHHQQQHQQH  180
QQQLLQYWSD ALNLSPRGML TRLGPDGRPL FRLPTQPINT TKLYRGVRQR HWGKWVAEIR  240
LPRNRTRLWL GTFDTAEDAA MAYDREAFKL RGENARLNFP ELFLNKDKKE EQQQQEQEAS  300
SPVLSAIAKQ HEPSSEHRDV PIEESNENDS GDATVSDDQV HATTESSEGV SQEMVWGEMS  360
AWFNAIPAAW GPGSPMWDDL DATNNLLCQS HIPFSNPNQQ ELNDAERQEQ NTGPGYLWKD  420
QD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21222280160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.192980.0hypocotyl| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G203100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6485670.0HE648567.1 Glycine max dreb5 gene for drought responsive element binding protein 5, cultivar XanhBaBe.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235100.20.0dehydration-responsive element binding protein 5
SwissprotQ9SKT15e-57ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLI1LUF40.0I1LUF4_SOYBN; Uncharacterized protein
STRINGGLYMA12G33020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]