PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G199200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 35459.5 Da PI: 5.8072 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ +++++G+ +W+ +r g+ R++k+c++rw++yl Glyma.12G199200.1.p 14 KGTWTPEEDAKLIAYITRYGSWNWRQLPRFAGLARCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.9 | 1.2e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+e++++++++lG++ W+ Ia +++ gRt++++k++w++ Glyma.12G199200.1.p 67 RGNYTKEEEEIIIRLHEKLGNK-WSVIATHLP-GRTDNEIKNHWHTT 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.508 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.52E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.56E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.518 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.1E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.68E-13 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MRTPSSSHKS GLNKGTWTPE EDAKLIAYIT RYGSWNWRQL PRFAGLARCG KSCRLRWLNY 60 LRPNIKRGNY TKEEEEIIIR LHEKLGNKWS VIATHLPGRT DNEIKNHWHT TLKKRFGKNT 120 VHPNKKVKAT KSNSSGSKEI QKVGFFHSSS TITTSETSDS VPLSPREFSS TTSDYTTVVT 180 NENFLLEDGF DFLEACLEDV NENIWTETNA ASISNSKTPM LDNGNGSNFH GSDAAGPIME 240 YNENLVLEND EFAFLEALQP TVTTENFLTD MSLVPNELLA PLVNESEEYF SSLYDVDLWC 300 PSNFHDLHVG LLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-29 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers (PubMed:17015446, PubMed:19161942). Expressed in stomatal guard cells (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G199200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 2e-41 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540332.2 | 0.0 | transcription factor MYB8 | ||||
Swissprot | Q9LTC4 | 3e-52 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A0R0HI07 | 0.0 | A0A0R0HI07_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A3S5HYK7 | 0.0 | A0A3S5HYK7_GLYSO; MYB15 | ||||
STRING | GLYMA12G32541.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16747 | 6 | 7 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 8e-53 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G199200.1.p |