PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G199100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 29091.4 Da PI: 5.3855 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.9 | 1.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +++++G +W++ ++ g+ R++k+c++rw++yl Glyma.12G199100.1.p 14 KGTWTPEEDKKLIAYITRYGHWNWNLLPKFAGLERCGKSCRLRWLNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.1e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eEde +++ v++lG++ W++Ia+ ++ gRt++++k++w++ Glyma.12G199100.1.p 67 RGNYTQEEDETIIKMVQRLGNR-WSLIAAQLP-GRTDNEIKNYWHTN 111 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.465 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.60E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.587 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 3.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-26 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.26E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVKNTYSDKS GHRKGTWTPE EDKKLIAYIT RYGHWNWNLL PKFAGLERCG KSCRLRWLNY 60 LRPNIKRGNY TQEEDETIIK MVQRLGNRWS LIAAQLPGRT DNEIKNYWHT NLKKKYHQQN 120 VNAETEVSKS KDHQSPDEAL PKPNNVDDVP FQNLPPTSQS TDSCTTSSII ISPTQFSITT 180 TGRSSDDSKE KFDIPYEDEF AFADVMNESF WLEPYVVDIS CYPSDVLVAE PDCFSPVPDV 240 ELWSHDHEYF A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 14 | 115 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G199100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 4e-42 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539518.1 | 0.0 | transcription factor MYB4 | ||||
TrEMBL | A0A0R0H886 | 0.0 | A0A0R0H886_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G32530.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 2e-52 | myb domain protein 53 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G199100.1.p |