PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G194400.1.p
Common NameGLYMA_12G194400, LOC100797992
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 782aa    MW: 84642.9 Da    PI: 6.0099
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G194400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.8e-20109164156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Glyma.12G194400.1.p 109 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 164
                          688999***********************************************999 PP
2START219.21.4e-683035221206
                          HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          ela +a++el+ +a+ +ep+W +     + +n+de++++f+++ +     ++ ea+r+++vv+m++++lve+l+d++ qW++ +     +
  Glyma.12G194400.1.p 303 ELAVAAMEELIGMAQMGEPLWLTTLdgtTVLNEDEYIRSFPRGIGpkpvgFKCEASRETAVVIMNHVNLVEILMDVN-QWSTVFSgivsR 391
                          57899********************99999************999********************************.************ PP

                          EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE CS
                START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh 161
                          a+tlev+s+g      galq+m+ae q++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+
  Glyma.12G194400.1.p 392 AMTLEVLSTGvagnynGALQVMTAEVQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGY 477
                          ****************************************************************99....5******************* PP

                          EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 162 skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          skv+wvehv++++r +h+l+++lv+sg+a+gak+w a l+rqce+
  Glyma.12G194400.1.p 478 SKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIANLDRQCER 522
                          *******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2388164IPR009057Homeodomain-like
SuperFamilySSF466891.92E-1999166IPR009057Homeodomain-like
PROSITE profilePS5007116.925106166IPR001356Homeobox domain
SMARTSM003891.2E-19107170IPR001356Homeobox domain
CDDcd000862.84E-19109167No hitNo description
PfamPF000464.4E-18109164IPR001356Homeobox domain
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PROSITE profilePS5084844.034294525IPR002913START domain
SuperFamilySSF559613.08E-35294524No hitNo description
CDDcd088751.91E-127298521No hitNo description
SMARTSM002349.2E-62303522IPR002913START domain
PfamPF018521.6E-57304522IPR002913START domain
Gene3DG3DSA:3.30.530.206.4E-6397522IPR023393START-like domain
SuperFamilySSF559615.6E-25541773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MPAGIMIPAR NMPSMIGRNG TVGGFGLSSG LSLGHIENHK ASESQRSVEM FQPNLMEAGQ  60
LHPLDMPQNT SESDVPRIRE DDFDSATKSG SENLEGASGE DQDPRPNKKK RYHRHTQHQI  120
QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH ENTQLRTENE  180
KLRADNMRFR EALGNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR ISAIAAKYVG  240
KPVVSYPLVS PSSVPPRPLE LGVSGGFGGQ PGGIGGDMYG GAAGDLLRSI SGPTEADKPI  300
IIELAVAAME ELIGMAQMGE PLWLTTLDGT TVLNEDEYIR SFPRGIGPKP VGFKCEASRE  360
TAVVIMNHVN LVEILMDVNQ WSTVFSGIVS RAMTLEVLST GVAGNYNGAL QVMTAEVQVP  420
SPLVPTRESY FVRYCKQHGD GTWAVVDVSL DNLRPSPSAR CRRRPSGCLI QEMPNGYSKV  480
IWVEHVEVDD RGVHNLYKQL VSSGHAFGAK RWIANLDRQC ERLASAMATN IPTVDVGVIT  540
NPDGRKSMLK LAERMVISFC AGVSASTAHT WTTLSGTGAD DVRVMTRKSV DDPGRPPGIV  600
LSAATSFWLP VSPKRVFEFL RDENSRSEWD ILSNGGVVQE MAHIANGRDT GNCVSLLRVN  660
SANSSQSNML ILQESCADST GSFVIYAPVD IVAMNVVLNG GDPDYVALLP SGFAILPDGT  720
TAHGGGIGDI GHGGSLLTVA FQILVDSVPT AKLSLGSVAT VNNLIACTVE RIKAALSGEV  780
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.213220.0flower| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G194400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311700.0KT031170.1 Glycine max clone HN_CCL_122 homeodomain/HOMEOBOX transcription factor (Glyma13g38430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592816.10.0homeobox-leucine zipper protein HDG2 isoform X1
RefseqXP_028195177.10.0homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A445HSK40.0A0A445HSK4_GLYSO; Homeobox-leucine zipper protein HDG2 isoform A
TrEMBLK7LVW40.0K7LVW4_SOYBN; Uncharacterized protein
STRINGGLYMA12G32050.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Representative plantOGRP14515136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2