PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G193300.1.p
Common NameGLYMA_12G193300, LOC100798860
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 478aa    MW: 52801.3 Da    PI: 6.4086
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G193300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-182875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +l d+vk++G g+W+++ +  g+ R++k+c++rw ++l
  Glyma.12G193300.1.p 28 KGPWTPEEDAILMDYVKKHGEGNWNSVQKNSGLLRCGKSCRLRWANHL 75
                         79******************************99**********9986 PP
2Myb_DNA-binding48.52e-1581124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++++eE++ ++d++ +lG++ W++ a+ ++ gRt++++k++w++
  Glyma.12G193300.1.p  81 KGAFSQEEEQVIIDLHSKLGNK-WARMAAQLP-GRTDNEIKNFWNT 124
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.3852375IPR017930Myb domain
SuperFamilySSF466894.49E-3025122IPR009057Homeodomain-like
SMARTSM007176.3E-152777IPR001005SANT/Myb domain
PfamPF002491.3E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-242982IPR009057Homeodomain-like
CDDcd001672.26E-123075No hitNo description
PROSITE profilePS5129424.77176130IPR017930Myb domain
SMARTSM007172.5E-1480128IPR001005SANT/Myb domain
PfamPF002499.2E-1481124IPR001005SANT/Myb domain
CDDcd001673.73E-1083124No hitNo description
Gene3DG3DSA:1.10.10.607.2E-2583129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MCPMARTVSN SNETAAKEEG EVRNGVRKGP WTPEEDAILM DYVKKHGEGN WNSVQKNSGL  60
LRCGKSCRLR WANHLRPNLK KGAFSQEEEQ VIIDLHSKLG NKWARMAAQL PGRTDNEIKN  120
FWNTRMKRRQ RAGLPLYPPE VHAEATSYLL QHHRYLEQQQ QQQPHSSSSF SLLLSSCYPN  180
KLNDPNQTHH HSNANLLQSQ PDHSANRYIN PSQQFKFSNE NSGSNGNFAF PLSPLSPYGS  240
SSSTLLNHSF GGGDHGFIAG SPYEPFSLVQ GSTTDISSNQ TPTPASSYAS GVDGLMGASS  300
MVNNNNNNND YYEVAPLSPP QGNSGLLDAL VMEAQGLSHN EKSKSEEDPN LAGKLSCKRK  360
KMEYAEEGGT VPAMKKNSGN STTNESQRDD DISSSQLAKG KEQIGEDPLE EMNGMDDDLV  420
SLLNHFPLEM PMPEWYRRGG NQSLGLENQP KASLPDPADQ EHAWTLGTCW NNMPRIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28281297107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G193300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539501.20.0transcription factor MYB101
TrEMBLK7LVW10.0K7LVW1_SOYBN; Uncharacterized protein
STRINGGLYMA12G31950.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-70myb domain protein 101