PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G184700.1.p
Common NameGLYMA_12G184700, LOC100810396
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 421aa    MW: 47416.1 Da    PI: 8.0102
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G184700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.12e-3346100155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Glyma.12G184700.1.p  46 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 100
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.48943103IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-3144101IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1645101IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-2346101IPR006447Myb domain, plants
PfamPF002492.4E-94899IPR001005SANT/Myb domain
PfamPF143791.9E-24147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MYHHHQHQGK NIHSSSRMPI PSERHMFLQT GNGSGDSGLV LSTDAKPRLK WTPDLHARFI  60
EAVNQLGGAD KATPKTVMKL MGIPGLTLYH LKSHLQKYRL SKNLHGQSNN VTYKITTSAS  120
TGERLSETNG THMNKLSLGP QANKDLHISE ALQMQIEVQR RLNEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QETLGRQNLG VVGIEAAKVQ LSELVSKVSS QCLNSAFTEP KDLQGFFPQQ  240
TQTNPPNDCS MDSCLTSSDR SQKEQEIQNG LRHFNSHVFM EHKEATEAPN NLRNPELKWC  300
EDGKKNTFLA PLSKNEERRN YAAESSPNNL SMSIGLERET ENGINLYPER LITESQSDGE  360
FQHRNRIKPE TLKPVDEKVS QDYRLPASYF AAARLDLNTH GDNEAATTCK QLDLNRFSWS  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.532510.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G184700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0935530.0BT093553.1 Soybean clone JCVI-FLGm-24O19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350653.10.0MYB-CC domain-containing transcription factor PHR21
RefseqXP_028192917.10.0myb-related protein 2-like
SwissprotQ9SQQ91e-148PHL9_ARATH; Myb-related protein 2
TrEMBLA0A0B2R6R90.0A0A0B2R6R9_GLYSO; Myb family transcription factor APL
TrEMBLI1LTV80.0I1LTV8_SOYBN; Uncharacterized protein
STRINGGLYMA12G31020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-150G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]