PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G184500.1.p
Common NameGLYMA_12G184500, LOC100775461
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 489aa    MW: 54119 Da    PI: 7.2442
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-10184214434
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                           k  rr+++NReAAr+sR+RKka++++Le  
  Glyma.12G184500.1.p 184 AKTLRRLAQNREAARKSRLRKKAYVQQLESS 214
                          6889************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-5181246IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.197183227IPR004827Basic-leucine zipper domain
PfamPF001702.3E-7184216IPR004827Basic-leucine zipper domain
CDDcd147081.78E-21185235No hitNo description
SuperFamilySSF579591.85E-6185227No hitNo description
Gene3DG3DSA:1.20.5.1707.7E-7186227No hitNo description
PROSITE patternPS000360188203IPR004827Basic-leucine zipper domain
PfamPF141442.4E-28267341IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MASHRIGELG LSESGPSSHH IPYGVLHGIN TPASSLINQG SAFDFGELEE AIVLHGVKGR  60
NDEGKASLFT ARPAATLEMF PSWPMRFQQT PRVGSKSGGE STDSGLSSKT EPPFEAESPI  120
SKKASSSDHH QAFDQQHLQH RQQLQQEMAS DAPRAASSQN QSAAKSPQEK RKGAGSTSDK  180
PLDAKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLNQ IEQELQRARP QGLFVDCGGV  240
GSTVSSAGAA MFDMEYARWL EEDHRLMGEL RNGLQAPLSD SDMRVMVDGY LSHYDEIFRL  300
KGVAAKSDVF HLINGMWTSQ AERCFLWIGG FRPSDLIMML IQQLEPLAEQ QIMGMYGLKH  360
SSQQAEEALS QGLEQLQQSL VDTIAGGPVV DGVQQMVVAM SKLANLEGFV RQADNLRQQT  420
LHQLCRLLTV RQAARCFIVI GEYYGRLRAL SSLWASRPRE TLINDDNSCQ TTTEMQIVQH  480
SQNYFSSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.236550.0hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G184500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352341e-152AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592765.10.0transcription factor TGA9 isoform X1
RefseqXP_014620491.10.0transcription factor TGA9 isoform X1
RefseqXP_028192395.10.0transcription factor TGA9-like isoform X1
RefseqXP_028192396.10.0transcription factor TGA9-like isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A445HS570.0A0A445HS57_GLYSO; Transcription factor TGA9 isoform A
TrEMBLK7LVQ90.0K7LVQ9_SOYBN; Uncharacterized protein
STRINGGLYMA12G30990.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45553357
Representative plantOGRP64961119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]