PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G181400.1.p
Common NameGLYMA_12G181400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 308aa    MW: 33315.4 Da    PI: 4.644
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G181400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-05282304223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+ksF++ s L++H +  H
  Glyma.12G181400.1.p 282 SCKSCSKSFNSESGLQQHNKAkH 304
                          7*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.05281307IPR007087Zinc finger, C2H2
PROSITE patternPS000280283304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEFWGAEVKV GESVKVDPAE FEACIHLSQA ALGEAKKDKS NEPVVLYLKV GQQKFVLGTL  60
SREKIPQIPL ELVLEKEFEL SHNSKNASVH FCGYKAFYDA GDDSEEDEFT DSEEDVPLLK  120
AENGKPETKA EELKVPESKK AVAKASASAK QVKIVEPKKD NEEDSDDDSD EDDDFGSSDE  180
EMEDADSDSD DESDDKEDDD EETHPKNKKA DLGKKRPNES ASKTPVSSKK AKNATPEKTD  240
GKKGGHTATP HPAKKGGKTP SSEAKAKTPN NEAKTPMSGG LSCKSCSKSF NSESGLQQHN  300
KAKHGGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.274330.0cotyledon| flower| pod| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G181400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976760.0BT097676.1 Soybean clone JCVI-FLGm-22K12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242333.20.0histone deacetylase HDT1-like
RefseqXP_028195428.10.0histone deacetylase HDT1-like
SwissprotQ8LJS22e-96HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLI1LTR40.0I1LTR4_SOYBN; Uncharacterized protein
STRINGGLYMA12G30600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-28histone deacetylase 2C