PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G174100.1.p
Common NameGLYMA_12G174100, LOC100778135
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 701aa    MW: 76824.9 Da    PI: 7.7282
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G174100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.1e-24109210199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF 
  Glyma.12G174100.1.p 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL 196
                          89****************************986445444..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Glyma.12G174100.1.p 197 --RAENGDLCVGIRRA 210
                          ..4488999****997 PP
2Auxin_resp111.86.9e-37275358183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++ a+++++FevvY+Pra t+eF+++++ v+ a+++++s GmRfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+
  Glyma.12G174100.1.p 275 AVTLAASNQPFEVVYYPRANTPEFCIRTSAVRGAMRIQWSSGMRFKMPFETEDSSRISWfMGTIASVQLLDPIRWPNSPWRLLQ 358
                          678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-38101212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-29104210IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-22108209No hitNo description
SMARTSM010192.4E-23109211IPR003340B3 DNA binding domain
PROSITE profilePS5086313.169109211IPR003340B3 DNA binding domain
PfamPF023622.6E-22109210IPR003340B3 DNA binding domain
PfamPF065076.8E-32275358IPR010525Auxin response factor
PROSITE profilePS5174518.48587667IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKETDKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNVDFGAA RIPIPPLILC  60
CVAAVKFLAD PETDEVFARL RMVPLRNSEL DYEDSDGNGA EGSEKPASFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY SAEPPVQTVI AKDVHGEVWK FRHIYRGTPR RHLLTTGWSS  180
FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGGVGGAEG PCGWSSSGGG LGPGPGLGLG  240
PGPGPYGAFS GFLREESKVV RSGRPKVSGE SVREAVTLAA SNQPFEVVYY PRANTPEFCI  300
RTSAVRGAMR IQWSSGMRFK MPFETEDSSR ISWFMGTIAS VQLLDPIRWP NSPWRLLQVT  360
WDEPDLLHNV KRVSPWLVEL VSNVPIIHLA PFSPPRKKLR FPQHPEFPLD FQFPIPSFSG  420
NPFGSSTSSP LCCLSDNAPA GIQGARHAQI GISLSDLHLN NKLQLGLLPT NVHQLNLHTG  480
ICNGNITNHG KSKESLSCLL TMGNSNKSLE KSDHVKRHQF LLFGQPILTE QQISRSSSDV  540
LSQNFTVTDD ENKEKKEKGF LSDSQSSVSP GKSSSTTEFS WQVGSDTSHC KVFIESEDVG  600
RTLDLSCLGS YEELYMRLAN MFGIERSEML SHVLYRDAAG ALKQTGEEPF SEFMKTAKRL  660
TILTDSNNKD SRRVWITGIR NAEHGLDTAS NKTGPLGIFA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-701137922353Auxin response factor 1
4ldy_B2e-701137922353Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.249280.0cotyledon| root| seed coat| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G174100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540185.10.0auxin response factor 18
RefseqXP_006592702.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLI1LTK00.0I1LTK0_SOYBN; Auxin response factor
STRINGGLYMA12G29720.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]