PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.12G171600.1.p | ||||||||
Common Name | GLYMA_12G171600, LOC100777776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 39983.7 Da PI: 7.3824 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.7 | 1.6e-51 | 13 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ppGfrFhP+deel+v+yL++kv++++l++ +i+e+d+yk++Pw+Lp+k +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Glyma.12G171600.1.p 13 PPGFRFHPSDEELIVHYLENKVSSRPLPA-CIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKP 101 9**************************99.78***************8777899************************************ PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ls+ +++ +g+kk Lvfy+gr pkg ktdW+m+eyrl Glyma.12G171600.1.p 102 ILSScGSRRIGVKKALVFYSGRPPKGAKTDWIMNEYRL 139 ***988889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.2E-62 | 9 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.873 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 13 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MEGDQHGSNY SFPPGFRFHP SDEELIVHYL ENKVSSRPLP ACIIAEIDLY KYNPWELPNK 60 SLFGEEEWYF FSPRDRKYPN GLRPNRAAAS GYWKATGTDK PILSSCGSRR IGVKKALVFY 120 SGRPPKGAKT DWIMNEYRLV DTTIKSSRLK GSMRLDDWVL CRVRYKGYSQ KNSCENQESP 180 SELNLSAKLL RSEENPTKMN CRADMIPDYQ YKDYQIIASI LVGGPIPPIE SMPNLSFKGC 240 KGNNVVSDYE DGFTKGNSQT TIPSLESYFN PLTRKSNEDE QYGNLISFNR KFNTDNRMDG 300 STSKVLNSRE LNCYNQNHSQ DDIFNGNPPD PTINFQELNE LDFSGRYHQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-68 | 8 | 176 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-68 | 8 | 176 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-68 | 8 | 176 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-68 | 8 | 176 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-68 | 8 | 176 | 16 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-68 | 8 | 176 | 13 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-68 | 8 | 176 | 13 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.12G171600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539409.1 | 0.0 | NAC domain-containing protein 2 | ||||
Refseq | XP_028193893.1 | 0.0 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A0B2QU36 | 0.0 | A0A0B2QU36_GLYSO; NAC domain-containing protein 29 | ||||
TrEMBL | I1LTH1 | 0.0 | I1LTH1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G29360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-82 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.12G171600.1.p |
Entrez Gene | 100777776 |