PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.12G164100.1.p | ||||||||
Common Name | GLYMA_12G164100, LOC100793224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 666aa MW: 74273.5 Da PI: 6.0273 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.4 | 2.3e-22 | 118 | 218 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++ +++a+++ ++++ + +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F Glyma.12G164100.1.p 118 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL 205 99****************************975444444..8************************************************ PP E-SSSEE..EEEEE- CS B3 84 ldgrsefelvvkvfr 98 + +++el+v+v+r Glyma.12G164100.1.p 206 --RGENGELRVGVRR 218 ..449999*****97 PP | |||||||
2 | Auxin_resp | 111.4 | 8.7e-37 | 244 | 326 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv d +++ W +S+WrsLk Glyma.12G164100.1.p 244 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWADSEWRSLK 326 789******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-43 | 109 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-41 | 110 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.28E-21 | 116 | 218 | No hit | No description |
Pfam | PF02362 | 4.2E-20 | 118 | 218 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 118 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-21 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.8E-35 | 244 | 326 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 8.3E-12 | 538 | 631 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.393 | 541 | 633 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.53E-11 | 543 | 618 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 666 aa Download sequence Send to blast |
MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS 60 FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV TSPDDPLPES PRCTVHSFCK 120 TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR 180 HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQSNMPSSV ISSHSMHLGV 240 LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEARSH KLSVGMRFKM RFEGDEVPER 300 RFSGTIVGVG DNKSSVWADS EWRSLKVQWD EPSSILRPDR VSPWELEPLV STPPTNPQPS 360 QRNKRSRPPI LPSTMPDSSL QGVWKSPVES APFSYCDHQH GRDVYPSTNF NSTATGFLGF 420 GGNCYASNKS IYWSSRMENS TESFSPVALK EFGEKRQGTA NGCRLFRIQL HDNSNSNEES 480 LPMVTLSGRM GDDGPLPSLD AESDQHSEPS NVNRSDIPSV SCDAEKSCLR SPQESQSRQI 540 RSCTKVHMQG MAVGRAVDLT RFDGYEDLLR KLEEMFDITG ELCGSTKKWQ VVYTDNEDDM 600 MMVGDDPWLE FCSIVRKIFI YTAEEVRKLS PKIGLPISEE VKPSKMDSEA VANPEDQSSI 660 VGPGC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 7 | 351 | 13 | 357 | Auxin response factor 1 |
4ldw_A | 0.0 | 7 | 351 | 13 | 357 | Auxin response factor 1 |
4ldw_B | 0.0 | 7 | 351 | 13 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.6655 | 0.0 | root| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.12G164100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540131.1 | 0.0 | auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | I1LT90 | 0.0 | I1LT90_SOYBN; Auxin response factor | ||||
STRING | GLYMA12G28550.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6802 | 26 | 38 | Representative plant | OGRP550 | 15 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.12G164100.1.p |
Entrez Gene | 100793224 |
Publications ? help Back to Top | |||
---|---|---|---|
|