PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G158900.1.p | ||||||||
Common Name | GLYMA_12G158900, LOC100800275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 398aa MW: 43139.3 Da PI: 6.8963 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.1 | 4.4e-36 | 43 | 167 | 2 | 104 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssa 82 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ + ++++ + Glyma.12G158900.1.p 43 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELppwnptatpMQ------PPSQEIVHR 126 79**************************************************************87555444322......344444444 PP TCP 83 snsssg......................kaaksaakskksqksa 104 +n+s g +++++++++ +++ Glyma.12G158900.1.p 127 ENKSLGmddsltafscrgespafaaatrDSEQFSHPQV---EQN 167 44444455555677777776666543322222222111...111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-32 | 43 | 170 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.537 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGEPQHPHQH HQQAAATPSR AAMRGGGGGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD 60 RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI DQLAELPPWN PTATPMQPPS 120 QEIVHRENKS LGMDDSLTAF SCRGESPAFA AATRDSEQFS HPQVEQNENA NNISSSSISI 180 KYNSGSGFLP ASLDTDNIAE TIKTFFPVEA TTTSFQSYPP APPDLGQQDL RLSLQSFQDP 240 IMLHHQPQSH HEPVLFAGTA AAALGFDGGY GWSEHQHQNH HSEEQRLLYA GGNSGHGGGF 300 VFNTPAPVPA FGQFFSQRGP LQSSNTPSIR AWIDPSVDHH HHHHHYLSQL IHQGSVAGGS 360 GFSSGFSGFR IPARIQGEEE HDGVSDKPSS ASSDSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 50 | 103 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 50 | 103 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.34672 | 0.0 | cotyledon| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of torpedo-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G158900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592557.1 | 0.0 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-101 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | K7LUU9 | 0.0 | K7LUU9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G20160.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 2e-66 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G158900.1.p |
Entrez Gene | 100800275 |
Publications ? help Back to Top | |||
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