PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G158400.1.p

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 241aa MW: 27429.8 Da PI: 6.8864

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G158400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.9e-19	68	118	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t++q+ +Le++F++n+++ e++ +LA++lg++ rqV +W+qN+Ra++k Glyma.12G158400.1.p 68 RLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWK 118 689***********************************************9 PP
2	HD-ZIP_I/II	109.8	1.9e-35	65	156	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + +rl+++qv++LE++F ++ kLepe+K +la++Lg+ prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L++el Glyma.12G158400.1.p 65 NNKRLTEDQVAILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKAEL 154 579************9999******************************************************************9 PP HD-ZIP_I/II 92 ke 93 k+ Glyma.12G158400.1.p 155 KK 156 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-17	55	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.273	60	120	IPR001356	Homeobox domain
SMART	SM00389	2.3E-15	63	124	IPR001356	Homeobox domain
Pfam	PF00046	1.4E-16	68	118	IPR001356	Homeobox domain
CDD	cd00086	1.15E-15	68	121	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-18	69	118	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MHELRPQTAN FLCIGGEYVV TFQTTQPLII DVTYTVYNLI VVIFPIKTQP QDHAHHQRAK 60 HNNNNNKRLT EDQVAILEKC FASNMKLEPE QKFHLANQLG VPPRQVAIWY QNKRARWKTQ 120 SLEVDHGVLQ ARLENVVAEK KQLEKDVERL KAELKKAQEM LLISNNVKSG DHSNNNNNNA 180 SCEFSTSFEE GGSSGVVLDD ATHHHHHECW QSGSEVMQVE ELFTYFMGAN YGSGLHEKRA 240 *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.26374	0.0	hypocotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G158400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235414	0.0	AC235414.1 Glycine max strain Williams 82 clone GM_WBb0131H01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028192515.1	1e-145	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A368UHE4	0.0	A0A368UHE4_SOYBN; Uncharacterized protein
STRING	GLYMA12G18720.1	1e-145	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-34	homeobox protein 52

Link Out ? help Back to Top
Phytozome	Glyma.12G158400.1.p