PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G158000.1.p
Common NameGLYMA_12G158000, LOC100785646
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 395aa    MW: 43788.5 Da    PI: 6.9397
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G158000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.1e-071374655
                         S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
             Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                         +ft+ ++ e+e+  ++  n  ps++  + LA+k            ++ +qV +WFqN+R+  
  Glyma.12G158000.1.p 13 RFTQPEVAEMEAILQEhnNAMPSRDVLTTLAEKFsesqdrkgkiAVQMKQVWNWFQNKRYAI 74
                         69999*********9666999**************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-11476IPR009057Homeodomain-like
SMARTSM003895.7E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-81381IPR009057Homeodomain-like
PROSITE profilePS500719.9121377IPR001356Homeobox domain
PfamPF000467.1E-51374IPR001356Homeobox domain
CDDcd000861.05E-41375No hitNo description
PfamPF167191.5E-40132258IPR032001SAWADEE domain
CDDcd000240.00994145178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQPEVA EMEAILQEHN NAMPSRDVLT TLAEKFSESQ DRKGKIAVQM  60
KQVWNWFQNK RYAIRAKSSK TPGKLNITPM PRDDYNSTPI RSMPQQPTAA PIPAASATVP  120
TAVKATPENS VLEFEAKSGR DGAWYDVATF LSHRYLETSD PEVLVRFAGF GPEEDEWINI  180
RKHVRPRSLP CESSECVVVI PGDLILCFQE GKEQALYFDA HVLDAQRRRH DVRGCRCRFL  240
VRYDHDQSEE IVPLRKICRR PETDYRLQQL HAVNEAAPMD QQKTGMDPAA NVNAVRATTT  300
ETAANVNAVR ATTTETVPKQ LIAANIHMET VPVVQTNVPQ PPQSMDMGVD QKKAETNTDV  360
QAGNSIITPG SVLTNIITTS GVPKVSSQTQ NMVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-461322624134SHH1 SAWADEE
4iur_B4e-461322624134SHH1 SAWADEE
4iut_A4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-461322624134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.362720.0cotyledon| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G158000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959970.0BT095997.1 Soybean clone JCVI-FLGm-20O13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620435.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
RefseqXP_028223173.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ71e-146SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0B2PMB50.0A0A0B2PMB5_GLYSO; Protein SAWADEE HOMEODOMAIN-like 2 isoform A
TrEMBLA0A0R0H5Q70.0A0A0R0H5Q7_SOYBN; Uncharacterized protein
STRINGGLYMA12G18490.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-128sequence-specific DNA binding transcription factors;sequence-specific DNA binding