PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.12G121500.1.p | ||||||||
Common Name | GLYMA_12G121500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 292aa MW: 32086.2 Da PI: 6.9696 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.9 | 2.2e-35 | 20 | 123 | 2 | 100 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssas 83 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+ l+++ + +++++++ Glyma.12G121500.1.p 20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKTSIDRLAELppwhppthE----------EEKQNDA 99 79**************************************************************443332220..........2222222 PP TCP 84 nsssg.............kaaksaakskks 100 + s + + + +++ Glyma.12G121500.1.p 100 AGSTPkaigafssthadtD------PINFQ 123 2222233444432212220......22222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.6E-31 | 20 | 104 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.872 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MRTGVGDIVQ VEGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIEF YDVQDRLGYD 60 RPSKAVDWLI KKAKTSIDRL AELPPWHPPT HEEEKQNDAA GSTPKAIGAF SSTHADTDPI 120 NFQTNNSSED LGLSLHCFQD HPGLIHWQSQ QTGAHQTPPS NEHQIRTLFA GSTPGGFENH 180 YQRSVTWNNE ATTTDHVNRL GFILNSQPFI GQGSTSAYAQ SGGTLQSSFS FPMTSPSELH 240 RPQPVNQPSI FDSRFVSDGL ADFCIPDRIQ GVEENHGVAS NRPSSSPSSI H* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-21 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-21 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.22541 | 0.0 | cotyledon| pod |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.12G121500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-175 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028193708.1 | 0.0 | transcription factor TCP4-like | ||||
TrEMBL | I1LSA4 | 0.0 | I1LSA4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G14200.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 6e-49 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.12G121500.1.p |