PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G117000.1.p | ||||||||
Common Name | GLYMA_12G117000, LOC100775465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 23253.2 Da PI: 10.3956 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7e-20 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk++r++lg+f+tae+Aa+a++ a+++++g Glyma.12G117000.1.p 22 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEDAARAYDVAARNFRG 71 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-38 | 22 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.406 | 22 | 79 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-13 | 22 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.05E-30 | 22 | 79 | No hit | No description |
PRINTS | PR00367 | 5.4E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MAKEKKNLSN KNKKPSNADE VHFRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEDAAR 60 AYDVAARNFR GPKAKNNFPF LPDNNTNVNL NKKNNNVNVK SDSPSQSSTV ESSTPEREFT 120 RRAAPAAMDR FPFLPIQQQI LVTHPVAPMR PVYFLDRAHF MTQPFPLRFE PGPVQSDSDS 180 SSVVVDCQPK RELNLDLNLA PPNEY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 22 | 80 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-21 | 22 | 80 | 5 | 64 | ATERF1 |
3gcc_A | 4e-21 | 22 | 80 | 5 | 64 | ATERF1 |
5wx9_A | 1e-20 | 10 | 88 | 2 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.31936 | 0.0 | cotyledon| epicotyl| leaf| pod| root| seed coat| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G117000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031080 | 0.0 | KT031080.1 Glycine max clone HN_CCL_133 AP2-EREBP transcription factor (Glyma06g44430.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014620342.1 | 1e-150 | ethylene-responsive transcription factor 9 | ||||
Swissprot | Q9FE67 | 1e-47 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | A0A0R0HB50 | 1e-148 | A0A0R0HB50_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G13315.1 | 1e-102 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-32 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G117000.1.p |
Entrez Gene | 100775465 |
Publications ? help Back to Top | |||
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