PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G116900.1.p
Common NameGLYMA_12G116900, Glyma12g13300.1, LOC100820375
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 357aa    MW: 40355 Da    PI: 8.165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G116900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-08129149526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ f+r G+C +Gd C F+Hg
  Glyma.12G116900.1.p 129 VCPEFRR-GQCDRGDACEFSHG 149
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-6124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441125151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4128151IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-6128149IPR000571Zinc finger, CCCH-type
SMARTSM003567.8159182IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.23159183IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSSVFSEHKF QLQPSHQLLS LKKSLRDIDI PVPPRKLLTR RSAAVHDVSG DMFSDDTLRH  60
KYLPHNGSTD SSDDDSGDPY ASDQFRMFEF KVRRCTRSRS HDWTDCPFVH PGEKARRRDP  120
RRFHYSATVC PEFRRGQCDR GDACEFSHGV FECWLHPSRY RTEACKDGRN CKRKVCFFAH  180
TPRQLRVLHS NENSNKKKCT NMSPHNNNNN TNNCCLVCHC SSSTRSPTST LFGMSHFSPP  240
LSPPSPSSPS RFETNHHHGV VKYNKDVLSE LMCSMEGLNF GEASLLSAAS KPHNNLSSWL  300
DVSEDHNQKQ FSTLSPTITA CGSFSNNGNG RFLREESGVV DDVISPDLAW VNELLM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.564490.0cotyledon| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G116900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311540.0KT031154.1 Glycine max clone HN_CCL_145 C3H-type 1 Zn transcription factor (Glyma12g13300.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539940.10.0zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA11e-73C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLI1LS620.0I1LS62_SOYBN; C3H-type 1 Zn transcription factor
STRINGGLYMA12G13300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.16e-69C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]