PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G110400.1.p | ||||||||
Common Name | GLYMA_12G110400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 408aa MW: 45934 Da PI: 5.7753 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 4e-19 | 202 | 252 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge Glyma.12G110400.1.p 202 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 252 59******9.**********955...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.26E-33 | 201 | 261 | No hit | No description |
PROSITE profile | PS51032 | 23.024 | 202 | 259 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 202 | 260 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-40 | 202 | 265 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 202 | 260 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-12 | 203 | 252 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 203 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-11 | 225 | 241 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MANNSGKSNK EGVEGTQLKV IGESEGQDWE KEKGKRLDLS SGRRQWKPVF DDASVSHRPL 60 KKIRSPEPEN PNQQQQQQPS SMLSLQPPSS RIVFPFAFEG SQHPMPFPHP FGTTNLPLFR 120 PPLHPTQQMI SFLPSQNMGY PPFLAPESTM PHEHQQHHHQ QLLQYWSDAL NLSPRGRMMM 180 MNRTEGRQML RPQAQPLNAT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEDAAM 240 AYDREAFKLR GENAKLNFPE LFLNKDKAEQ STTAPASSSN EGSTSSQNTK QPEPIPEGTT 300 NTESEDMPPT ETFAVENAVT EEGISQPQEL VWGEWFNAIP AGWGPGSPVW DDLDPNNNLL 360 LHSQLPFVNP NQQEFHDAGA SSRTQQEDNN TEPGACSNIS ISFGEIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-20 | 201 | 259 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G110400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540897.1 | 0.0 | ethylene-responsive transcription factor ERF054 | ||||
TrEMBL | K7LU62 | 0.0 | K7LU62_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G12270.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G110400.1.p |