PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G104800.1.p
Common NameGLYMA_12G104800, LOC778184
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 306aa    MW: 34317.9 Da    PI: 4.6375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G104800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
  Glyma.12G104800.1.p 14 KGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                         799*******************************************97 PP
2Myb_DNA-binding58.61.4e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++Ede +++ +k+lG++ W++Ia++++ gRt++++k++w++ 
  Glyma.12G104800.1.p  67 RGNFTQQEDECIIRMHKKLGNK-WSAIAAELP-GRTDNEIKNHWHTT 111
                          89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.383961IPR017930Myb domain
SuperFamilySSF466896.91E-3012108IPR009057Homeodomain-like
SMARTSM007179.6E-111363IPR001005SANT/Myb domain
PfamPF002495.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231568IPR009057Homeodomain-like
CDDcd001671.65E-91661No hitNo description
PROSITE profilePS5129426.562116IPR017930Myb domain
SMARTSM007172.1E-1766114IPR001005SANT/Myb domain
PfamPF002491.4E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2669114IPR009057Homeodomain-like
CDDcd001672.86E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MVRTPSCDKS GTRKGTWTPE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPNVKRGNF TQQEDECIIR MHKKLGNKWS AIAAELPGRT DNEIKNHWHT TLKKWSQQNA  120
ITNEEARTSK SKDKVPNKGV TVTLPANSSL MSDNSSSSPV SSTCSEFSSI TSDNSTAASM  180
ENLVFEDDDF GFLDSYNESF WTELNLDDIS FDAPCEMDLG DTNVSFESTS CSNSNTLDSL  240
HGSTSESIVV DNDFGGFLDA YTKAAVDNFW TQPYVADMSH VPSELLVPSM AESEYFTPIY  300
DDLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29141147106B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.285840.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G104800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150397e-47AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540870.10.0transcription factor MYB30 isoform X1
RefseqXP_028193598.10.0transcription factor MYB30-like isoform X1
TrEMBLA0A445HPE60.0A0A445HPE6_GLYSO; Transcription factor MYB14 isoform A
TrEMBLI1LRW10.0I1LRW1_SOYBN; Uncharacterized protein
STRINGGLYMA12G11390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-56myb domain protein 14