PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G104600.1.p
Common NameGLYMA_12G104600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 302aa    MW: 34337 Da    PI: 5.0535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G104600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-092391148
                         HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +l+ +v+++G  +W+  ++  g+ R++k+c++rw +yl
  Glyma.12G104600.1.p  2 KLIAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 39
                         79********99************************97 PP
2Myb_DNA-binding60.43.8e-194589147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg++T+eE+e +++ +k+lG++ W++Ia++++ gRt++++k++w++ 
  Glyma.12G104600.1.p 45 RGNFTQEEEECIIRMHKKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 89
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.521139IPR017930Myb domain
SMARTSM0071746141IPR001005SANT/Myb domain
PfamPF002491.3E-6239IPR001005SANT/Myb domain
SuperFamilySSF466891.91E-23286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-17246IPR009057Homeodomain-like
CDDcd001679.62E-4239No hitNo description
PROSITE profilePS5129428.2824094IPR017930Myb domain
SMARTSM007173.9E-184492IPR001005SANT/Myb domain
PfamPF002495.0E-174589IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-264793IPR009057Homeodomain-like
CDDcd001673.49E-134790No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKLIAYVTRY GCWNWRQLPK FAGLARCGKS CRLRWMNYLR PNLKRGNFTQ EEEECIIRMH  60
KKLGNRWSAI AAELPGRTDN EIKNHWHTTL KKRSQQNTVT IEETRVSKSK NNESVPNKGV  120
TVTLLATSSQ MSDNSSISPV SSSCSEFSSI TSYHSTAASC MENLVFEDDD FGFLDSYNES  180
FWTQLNLDDI SNNAPCEIFS EDSNGCFQST DATQIHDSCA KSPTTSESNI VVDNDFVDFQ  240
DAYKDATVDN FWSQTYVADM SHVPTELLVH SVAESECFTP IYDDLWGQSY LYHENHHGLF  300
R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-2329317107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G104600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0292631e-42AB029263.1 Glycine max gene for GmMYB6, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593053.10.0transcription factor MYB14
SwissprotQ9SJX83e-47MYB14_ARATH; Transcription factor MYB14
TrEMBLK7LU250.0K7LU25_SOYBN; Uncharacterized protein
STRINGGLYMA12G11340.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-47myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]