PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G100100.3.p | ||||||||
Common Name | GLYMA_12G100100, LOC100782260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 728aa MW: 79323.7 Da PI: 5.639 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 55 | 110 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Glyma.12G100100.3.p 55 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 110 688999***********************************************999 PP | |||||||
2 | START | 227.6 | 3.7e-71 | 246 | 466 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 ela +a++el+ +a+ +ep+W + +++n+de++++f+++ + ++ ea+r+++vv+m++++lve+l+d++ qW++ + Glyma.12G100100.3.p 246 ELAVAAMEELIGMAQMGEPLWLTTLdgtsTMLNEDEYIRSFPRGIGpkpsgFKCEASRETAVVIMNHVNLVEILMDVN-QWSTVFSgivs 334 57899**************************************999********************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 +a+tlev+s+g galq+m+aelq+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p ++R++++pSg+li++++ng Glyma.12G100100.3.p 335 RAMTLEVLSTGvagnynGALQVMTAELQLPTPLVPtRESYFVRYCKQHADGTWAVVDVSLDNLRPGP----SARCRRRPSGCLIQEMPNG 420 *******************************************************************....5****************** PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +skvtwvehv++++r +h+l+++lv+sg+a+gak+wvatl+rqce+ Glyma.12G100100.3.p 421 YSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 466 ********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 34 | 110 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-19 | 43 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 52 | 112 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-19 | 53 | 116 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.1E-18 | 55 | 110 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.47E-19 | 55 | 113 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 87 | 110 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.887 | 237 | 469 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.69E-35 | 237 | 468 | No hit | No description |
CDD | cd08875 | 1.61E-130 | 241 | 465 | No hit | No description |
SMART | SM00234 | 2.0E-64 | 246 | 466 | IPR002913 | START domain |
Pfam | PF01852 | 4.0E-60 | 247 | 466 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.7E-5 | 340 | 448 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.98E-25 | 486 | 719 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence Send to blast |
MFQPNLMDAL EMGQNTSESE VPRILEDEFD SATKSGSENH EGASGEDQDP RPNKKKRYHR 60 HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK TQHERHENTN 120 LRTENEKLRA DNMRYREALS NASCPNCGGP TAIGEMSFDE HHLRLENARL REEIDRISAI 180 AAKYVGKPVV NYSNISPSLP PRPLELGVGG AGFGGQPGIG VDMYGAGDLL RSISGPTEAD 240 KPIIIELAVA AMEELIGMAQ MGEPLWLTTL DGTSTMLNED EYIRSFPRGI GPKPSGFKCE 300 ASRETAVVIM NHVNLVEILM DVNQWSTVFS GIVSRAMTLE VLSTGVAGNY NGALQVMTAE 360 LQLPTPLVPT RESYFVRYCK QHADGTWAVV DVSLDNLRPG PSARCRRRPS GCLIQEMPNG 420 YSKVTWVEHV EVDDRGVHNL YKQLVSSGHA FGAKRWVATL DRQCERLASA MATNIPTVDV 480 GVITNQDGRK SMMKLAERMV ISFCAGVSAS TAHTWTTLSG TGADDVRVMT RKSVDDPGRP 540 PGIVLSAATS FWLPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRDTGNCVSL 600 LRVNSANSSQ SNMLILQESC TNSTGSFVIY APVDIVAMNV VLNGGDPDYV ALLPSGFAIL 660 PDGTTSHNGS GGIGETGPSG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA 720 SLSGEPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.25254 | 0.0 | cotyledon| flower| meristem| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G100100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592380.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X2 | ||||
Refseq | XP_014620141.1 | 0.0 | homeobox-leucine zipper protein HDG2 isoform X2 | ||||
Refseq | XP_028192703.1 | 0.0 | homeobox-leucine zipper protein HDG2-like isoform X2 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A445HNN6 | 0.0 | A0A445HNN6_GLYSO; Homeobox-leucine zipper protein HDG2 isoform B | ||||
TrEMBL | I1LRR5 | 0.0 | I1LRR5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G10710.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G100100.3.p |
Entrez Gene | 100782260 |