PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G100100.2.p
Common NameGLYMA_12G100100, LOC100782260
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 728aa    MW: 79323.7 Da    PI: 5.639
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G100100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2055110156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Glyma.12G100100.2.p  55 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 110
                          688999***********************************************999 PP
2START227.63.7e-712464661206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el+ +a+ +ep+W +      +++n+de++++f+++ +     ++ ea+r+++vv+m++++lve+l+d++ qW++ +     
  Glyma.12G100100.2.p 246 ELAVAAMEELIGMAQMGEPLWLTTLdgtsTMLNEDEYIRSFPRGIGpkpsgFKCEASRETAVVIMNHVNLVEILMDVN-QWSTVFSgivs 334
                          57899**************************************999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a+tlev+s+g      galq+m+aelq+++plvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng
  Glyma.12G100100.2.p 335 RAMTLEVLSTGvagnynGALQVMTAELQLPTPLVPtRESYFVRYCKQHADGTWAVVDVSLDNLRPGP----SARCRRRPSGCLIQEMPNG 420
                          *******************************************************************....5****************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwvehv++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Glyma.12G100100.2.p 421 YSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCER 466
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-2334110IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1943112IPR009057Homeodomain-like
PROSITE profilePS5007116.92552112IPR001356Homeobox domain
SMARTSM003891.2E-1953116IPR001356Homeobox domain
PfamPF000464.1E-1855110IPR001356Homeobox domain
CDDcd000862.47E-1955113No hitNo description
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PROSITE profilePS5084843.887237469IPR002913START domain
SuperFamilySSF559612.69E-35237468No hitNo description
CDDcd088751.61E-130241465No hitNo description
SMARTSM002342.0E-64246466IPR002913START domain
PfamPF018524.0E-60247466IPR002913START domain
Gene3DG3DSA:3.30.530.202.7E-5340448IPR023393START-like domain
SuperFamilySSF559611.98E-25486719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MFQPNLMDAL EMGQNTSESE VPRILEDEFD SATKSGSENH EGASGEDQDP RPNKKKRYHR  60
HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK TQHERHENTN  120
LRTENEKLRA DNMRYREALS NASCPNCGGP TAIGEMSFDE HHLRLENARL REEIDRISAI  180
AAKYVGKPVV NYSNISPSLP PRPLELGVGG AGFGGQPGIG VDMYGAGDLL RSISGPTEAD  240
KPIIIELAVA AMEELIGMAQ MGEPLWLTTL DGTSTMLNED EYIRSFPRGI GPKPSGFKCE  300
ASRETAVVIM NHVNLVEILM DVNQWSTVFS GIVSRAMTLE VLSTGVAGNY NGALQVMTAE  360
LQLPTPLVPT RESYFVRYCK QHADGTWAVV DVSLDNLRPG PSARCRRRPS GCLIQEMPNG  420
YSKVTWVEHV EVDDRGVHNL YKQLVSSGHA FGAKRWVATL DRQCERLASA MATNIPTVDV  480
GVITNQDGRK SMMKLAERMV ISFCAGVSAS TAHTWTTLSG TGADDVRVMT RKSVDDPGRP  540
PGIVLSAATS FWLPVPPKRV FDFLRDENSR NEWDILSNGG VVQEMAHIAN GRDTGNCVSL  600
LRVNSANSSQ SNMLILQESC TNSTGSFVIY APVDIVAMNV VLNGGDPDYV ALLPSGFAIL  660
PDGTTSHNGS GGIGETGPSG SLLTVAFQIL VDSVPTAKLS LGSVATVNNL IACTVERIKA  720
SLSGEPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.252540.0cotyledon| flower| meristem| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G100100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592380.10.0homeobox-leucine zipper protein HDG2 isoform X2
RefseqXP_014620141.10.0homeobox-leucine zipper protein HDG2 isoform X2
RefseqXP_028192703.10.0homeobox-leucine zipper protein HDG2-like isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A445HNN60.0A0A445HNN6_GLYSO; Homeobox-leucine zipper protein HDG2 isoform B
TrEMBLI1LRR50.0I1LRR5_SOYBN; Uncharacterized protein
STRINGGLYMA12G10710.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2