PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G097100.1.p | ||||||||
Common Name | GLYMA_12G097100, LOC100797998 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 615aa MW: 66669.4 Da PI: 5.4641 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 354 | 412 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+ Glyma.12G097100.1.p 354 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 412 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 338 | 414 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-27 | 346 | 414 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.815 | 348 | 414 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 353 | 413 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 355 | 412 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MIRRGGLSMD SDPIGSFFLH KPIVLNSFSA EDTNNHNPEW KKLSLHNNNM DATVTTKDYT 60 IPFRINLSCS SADNHDDVSS PTSLRSRTEM DFFSNKNSTK DDDNNIVAAA GSASLPDNDH 120 HSISPPTLDL KVNTCLNLLT TNASSDQSMV EDEISPNSED KETKKEMADL QGDLERIKRE 180 NQKLRDTLDE VNTNYNALQM HFMNMMQERK GEEGEDQQEV SDGKVKEKKQ GQSGGGVLVS 240 RQFMDLGLAS ADIEPSSSSG GIRSQDRSGS PNIDVASKGL GTSNNDGNNS VNDEEEKEYD 300 RGIESEDSPS GHADKVPRFS SPSKNNNVDQ AEAEATMRKA RVSVRARSEA PMITDGCQWR 360 KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTV LITTYEGNHN HPLPPTAMAM 420 AQTTSSAARM LLSGSMSSAD SIMNADFLTR TLLPCSSSMA TISASAPFPT VTLDLTHSPN 480 PLQFPRQQHP NQLQIGVPQN FANSPSSLMP QIFGQALYNQ SKFSGLQMSS HDTADPSSQF 540 GYQPHQVPPH LADTVGAAIA TDPNFTSALA AAITSIIGGA QQQHSNINNN SNNNVNMTAN 600 INNGNGNSNG NGKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 340 | 415 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G097100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540834.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-123 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | I1LRN9 | 0.0 | I1LRN9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G10350.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-116 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G097100.1.p |
Entrez Gene | 100797998 |