PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G089100.1.p
Common NameGLYMA_12G089100, LOC100805237
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 406aa    MW: 45188.8 Da    PI: 7.6452
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G089100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.31.5e-3246100155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++l++++gLtl+h+kSHLQkYRl
  Glyma.12G089100.1.p  46 KPRLKWTPDLHARFIEAVQQLGGADKATPKTVMKLIGIPGLTLYHLKSHLQKYRL 100
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.29743103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2944101IPR009057Homeodomain-like
SuperFamilySSF466891.68E-1545101IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2246101IPR006447Myb domain, plants
PfamPF002495.1E-94899IPR001005SANT/Myb domain
PfamPF143794.6E-20151196IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MYTHQQHQGK NIHSSSRMPI PSERQMFLQT GNGSGDSGLV LSTDAKPRLK WTPDLHARFI  60
EAVQQLGGAD KATPKTVMKL IGIPGLTLYH LKSHLQKYRL SKSLHGQSNN MTHKITINSG  120
AATDERLREN NGTHMNSLNL APQSNNKDLY ISEALHMQIE EQRRLNEQLE VQRLLQLRIE  180
AQGKYLQAVL EKAQETLGRQ NLGAVGLEAT KLQLSELVSK VSSQCLNSAF SDRLKEIQGF  240
SPHQQTQTNQ PNTNDCSMDS CLTSCEGSQK EQEIQNGGMS LRPFNVHTFM ERKEVIEGPN  300
LNNLPNTDLN WCDPVKKNTF LTPLSMHADK RSPSNLSMSI GLEGETENGS TIRTESVKPV  360
ADKVSQDYGL PSNYFAASKL DLTTEDNKDT KTSCKQLDLN GFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-1946102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1946102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1946102157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1946102157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1945102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G089100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959460.0BT095946.1 Soybean clone JCVI-FLGm-25M4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350652.10.0MYB-CC domain-containing transcription factor PHR20
RefseqXP_006592327.10.0MYB-CC domain-containing transcription factor PHR20 isoform X1
SwissprotQ9SQQ91e-129PHL9_ARATH; Myb-related protein 2
TrEMBLI1LRG60.0I1LRG6_SOYBN; Uncharacterized protein
STRINGGLYMA12G09490.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-109G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]