PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G088700.1.p
Common NameGLYMA_12G088700, LOC100101904
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 502aa    MW: 55253.2 Da    PI: 7.1037
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G088700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.21.1e-10201238744
                          HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                           rr+++NReAAr+sR+RKka++++Le    +L+   ++
  Glyma.12G088700.1.p 201 LRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQD 238
                          69************************877766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-5195271IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.8E-7201241No hitNo description
PfamPF001705.4E-8201240IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.14E-7201241No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
PfamPF141441.2E-27279354IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MASQRIGETG LSESGPSSHH VPYGVLHGIS TSSGLINQGS AFDFGELEEA IVLQGIKIRN  60
DEAKASALFT GRPSATLEMF PSWPMRFQQT SRGGSKSGGE STDSGSGVNT LSTKNELRFE  120
TESPISIKAS PSDHHQAFDQ HLQQQQQQQQ QQQETATAGT SSQNQSAAKS PQEKRKGAGS  180
TSEKPLDAKV LNDTHKHIYT LRRLAQNREA ARKSRLRKKA YVQQLESSRL KLTHLEQDLQ  240
RARSQGVFMG CGGAGGSLSS GAAMFDMEYA RWLEDDQRHM MELRSGLQVP LPDGELRVIV  300
DGYLSHYDEV FRLKGVAVKT DVFHLINGMW TSPAERCFLW IGGFKPSELI TMLIPQLEPL  360
VEQQIMGIHG LRHSLVQAEE ALTQGLEQLQ QSLVDTIAGS PVADGVQQMV AAMGKLGNLE  420
GFVSQADNLR QITLHQLCRL LTVRQAARCF LVIGEYYGRL RALSSLWASR PRETLISDDN  480
SCQTTTELQM VQSSQNHFSS F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66420.0hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G088700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150398e-91AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592326.20.0transcription factor TGA9 isoform X1
RefseqXP_014620103.10.0transcription factor TGA9 isoform X1
RefseqXP_014620104.10.0transcription factor TGA9 isoform X1
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0R0HDY80.0A0A0R0HDY8_SOYBN; Uncharacterized protein
STRINGGLYMA12G09430.50.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45553357
Representative plantOGRP64961119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]