PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G077800.3.p
Common NameGLYMA_12G077800, LOC100793050
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 761aa    MW: 84461.7 Da    PI: 7.0767
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G077800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-095535901954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Glyma.12G077800.3.p 553 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 590
                          665559******************************87 PP
2BELL106.51.8e-34408478272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          r e qk kakLl ++eeV +rYkqy++q+q+v+ sFe v+gl sa+pY+slAlk iS+hFrcLk+ai++q+
  Glyma.12G077800.3.p 408 RPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVVGLSSATPYVSLALKSISKHFRCLKNAISDQL 478
                          5689****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-36299476IPR006563POX domain
PfamPF075263.0E-43304475IPR006563POX domain
PROSITE profilePS5007111.985531594IPR001356Homeobox domain
CDDcd000864.49E-11534595No hitNo description
SMARTSM003892.4E-8534598IPR001356Homeobox domain
SuperFamilySSF466897.7E-17536600IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27537598IPR009057Homeodomain-like
PfamPF059203.5E-18551590IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MSSLRPELHV AQQLRRDKLR IQNSSQQHLQ EFSNNNLEHL SLHPGFNLDL LQVRNVRNGN  60
MLDEAAAALY SSEMITFSNP LSAPRNPLEC QELMMAQYGS TSFPHSSSTK EQQCEPRNLG  120
ASGMVNYNGS NPNNNNSTFY SSELNNNVSS EMGNSEIQIQ KQFGEIHYPP SSSSSPPLYH  180
NALQDMAYGV WGGNNNNHGE SVLHYGNNEL RFGGASLWTH NNSALGFKKI NNEQLHDTNH  240
PHQGLSLSLS SNSQQQSSKP CFEERSVVKP PSSPMKLNVL SNNNNNTVYR NVGPLGPFTG  300
YATILKSSRF LRPCQQLLDE WCCQSGSKFA KRGVCDVPEW VSRDVSAAST SATALNVDES  360
AAAKGGGNSG ASSSMLYSSI ENNNNNNSNN NNNSADGGAA SSFCLSSRPE CQKNKAKLLY  420
MQEEVTRRYK QYHQQMQMVV QSFESVVGLS SATPYVSLAL KSISKHFRCL KNAISDQLKL  480
TCEVLGEDYS IPTTSTGSKF DNNVARLRCM DQNFQKNKSG GANINFLEPQ QHVWRPQRGL  540
PERSVAILKA WLFEHFLHPY PTDTDKHMLA TQTGLSRNQV SNWFINARVR VWKPMVEEIH  600
MLETKGATEA HQHQTSSKND QLASASEGSN NQLKSDNQPA HEFGAHALHS HAIPEKQFQC  660
LEMGSSSLAG NEEQHMGMEE DQWSQEKRSK LECQIASTPS MDGTVMGFMP YRRSGLEGLG  720
SVSLTLGLRH GVEGVQQQHL QQEEELRRQF GGHMIHDFVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A8e-15540598563Homeobox protein Meis2
3k2a_B8e-15540598563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225030.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G077800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-117AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540761.10.0BEL1-like homeodomain protein 8
RefseqXP_006592271.10.0BEL1-like homeodomain protein 8
RefseqXP_028193046.10.0BEL1-like homeodomain protein 8
RefseqXP_028193047.10.0BEL1-like homeodomain protein 8
TrEMBLA0A445HM670.0A0A445HM67_GLYSO; BEL1-like homeodomain protein 8
TrEMBLK7LTM00.0K7LTM0_SOYBN; Uncharacterized protein
STRINGGLYMA12G08270.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-77BEL1-like homeodomain 8