PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G076200.1.p
Common NameGLYMA_12G076200, LOC100814686
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 702aa    MW: 77188.7 Da    PI: 8.0734
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G076200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.8e-24109210199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF 
  Glyma.12G076200.1.p 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL 196
                          89****************************986555555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Glyma.12G076200.1.p 197 --RAENGDLCVGIRRA 210
                          ..4488999****997 PP
2Auxin_resp117.41.2e-38278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++ a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafeted+s++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Glyma.12G076200.1.p 278 AVTLAASNKPFEVVYYPRASTPEFCVKASAVRAAMRIQWCSGMRFKMAFETEDASRISWfMGTIASVQVVDPIRWPNSPWRLLQ 361
                          678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-38104213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-30105210IPR015300DNA-binding pseudobarrel domain
CDDcd100173.74E-22108209No hitNo description
PfamPF023621.3E-22109210IPR003340B3 DNA binding domain
PROSITE profilePS5086313.324109211IPR003340B3 DNA binding domain
SMARTSM010192.5E-23109211IPR003340B3 DNA binding domain
PfamPF065072.6E-33278361IPR010525Auxin response factor
PROSITE profilePS5174516.306589669IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MKEGEKVLDP QLWHACAGGM VQMPQMNSKV FYFPQGHAEH AHTNIHLRLP PFILCNVEAV  60
KFMANPETDE VFAKLSLLPL RNSELGADSD GAGGDDVAEP SCCEKPASFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS  180
FVNQKKLVAG DSVVFLRAEN GDLCVGIRRA KKGISEGSGS GSSSVWSSAS GSGNGNCGIG  240
PYGPFSFFLK EENKMLRNGC GGNLSGRVKV RAEDVVEAVT LAASNKPFEV VYYPRASTPE  300
FCVKASAVRA AMRIQWCSGM RFKMAFETED ASRISWFMGT IASVQVVDPI RWPNSPWRLL  360
QVTWDEPDLL QNVKRVSPWL VELVSNIPLI NFTPFSPPRK KLRPQHPDFP LDVQFPIPMF  420
SGNQLGPNSP LCGFSDNAPA GIQGARHAQF GKSLSDLHLN NKLQLGMLPT NIHQLGVYNE  480
ISNGNMMTNH DKSKESLSCF LTMGKSTKSL EKSDDVKKHQ FLLFGQPILT EQQISSCSGD  540
VLSHRKRSVS DDKDKAKCLM DDSQSTLSQQ FSPGKASSAE FSWQLGLDTG HCKVFLESED  600
VGRTLDLSLF GSYEDLYRRL AIMFGIERSE ILNHVLYHDA AGAAKKTGEE PFSDFMKTAK  660
RLTILTDSSS KNIKRAFITG TRNGEHGLDA SNKTGPLSIF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-79738250388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.4930.0cotyledon| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G076200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539766.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLI1LR430.0I1LR43_SOYBN; Auxin response factor
STRINGGLYMA12G08110.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]