PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G070300.1.p | ||||||||
Common Name | GLYMA_12G070300, LOC100781896 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 542aa MW: 60200.1 Da PI: 8.2848 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 70 | 90 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H Glyma.12G070300.1.p 70 CEVCNKGFQRDQNLQLHRRGH 90 *******************88 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Glyma.12G070300.1.p 145 WKCDKCSKKYAVQSDWKAHSKIC 167 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.93E-7 | 67 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 67 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.845 | 68 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 78 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.6E-5 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.93E-7 | 140 | 165 | No hit | No description |
SMART | SM00355 | 150 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MMSEETFSVP PNSTIRATSL VHHVHVQPPS PNPNSNPAKR RRSLPGTPDP DAEVVALSPK 60 SLMATNRFLC EVCNKGFQRD QNLQLHRRGH NLPWKLKKRT NNDQVRKKVY VCPEKSCVHH 120 DPSRALGDLT GIKKHYSRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR EYKCDCGTLF 180 SRKDSFITHR AFCDALAEES ARVTTIPAAL SNLRSDHHHH LTNAQASRIP QIFSGFHSSD 240 QFGGGSSEAL LANHHHQQKL RLPLWLDHHQ VNNTQVLHHT LDNFSTEPSA FTSGTNSVPH 300 DLVQTMDMFG PQTQFVNYRY PEASFGGGNA NLSVLPPHGL KQEQEENKQH LSHSGASSNN 360 LYLSNSIQNP PHHHYMSATT LLQKAVQMGS TRISDNVFGS IVGTTNRNNN NDNNTNLEVQ 420 KLNELVSMEA GCNNNLGGGG DGYLLYDSFG VVNGTDKGLE HMVMPVDEET QQESIVGNSL 480 CSNNKNQLGL TRDFLGVGDN NNNLNPIRRP FFQQDLVEFN AMGSASASVM NLQSQYGGHY 540 C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 141 | 206 | 3 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 107 | KLKKRTNNDQVRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22112 | 0.0 | cotyledon| root| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G070300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-154 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540744.2 | 0.0 | protein indeterminate-domain 9 | ||||
TrEMBL | K7LTF8 | 0.0 | K7LTF8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G07510.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45260.1 | 1e-102 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G070300.1.p |
Entrez Gene | 100781896 |