PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G062200.1.p | ||||||||
Common Name | GLYMA_12G062200, LOC100815586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 661aa MW: 74180.1 Da PI: 6.5798 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.1 | 4.5e-115 | 287 | 657 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ cA+avss+d+ a++lL++++++asp gd +qRla++f++AL+arla++++++y al+ ++ts ++ ++a++++ ++P+ Glyma.12G062200.1.p 287 LRTLLILCAQAVSSDDHVSANELLKQIKQHASPLGDGTQRLAHCFANALEARLAGTGTQIYTALSHKRTS---AADMVKAYQMYISACPF 373 5789************************************************************999999...99*************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+s + aN++Il+ +++ e++HiiDf+i +G+QWpa++ L+++p+gpp+lRiTg++ p++g +e+++etg rLa+++++++vpfef Glyma.12G062200.1.p 374 KKLSMIFANHTILQLAKEVETLHIIDFGIRYGFQWPAFIYRLSKQPGGPPKLRITGIELPQPGfrPAERVQETGLRLARYCDRFNVPFEF 463 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+ +a+++e++++e+L++k++E l+ n +++ ++llde+v ++s+rd+vLkl+++ +P ++ ++ + ++n++ F++rf eal +ys+lf Glyma.12G062200.1.p 464 NA-IAQKWETIKIEDLKIKENELLVANAMFRFQNLLDETVVVNSPRDAVLKLIRKANPAIFLHATVNGSYNAPFFVTRFREALFHYSTLF 552 **.7************************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d l+++++re+ r + Ere++gr+++n+vaceg+er+er et+++W+ r ++aGFk++pl+++ ++ ++ l+ v+ +++ e+ + + Glyma.12G062200.1.p 553 DVLDTNVAREDPMRLMFEREFFGRQVMNIVACEGSERVERPETYKQWQVRNMRAGFKQLPLDKHLINKLRCKLKGVYHSDFMLLEDGNYM 642 *****************************************************************************777********** PP GRAS 359 vlgWkdrpLvsvSaW 373 ++gWk+r +++ S+W Glyma.12G062200.1.p 643 LQGWKGRVVYASSCW 657 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.18 | 261 | 638 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-112 | 287 | 657 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 661 aa Download sequence Send to blast |
MLMEEDLEAK PCMFHDSLAL QAAEKSFYEV IGETYPSSSS SSSIQNYHNV DSPDESSFSG 60 TTTSTGNSFG SQWNNVDLAD YKPSILQTTF PTDFVFQASS IQSSMNTTSK FAVTNSEFLA 120 SSAAGFLGPG STNLFSKSES VLQFERGVEE ANKFLPKGNP LVIDLENPSF RMVPLQQEEI 180 KAERDIDEIS AESRGRKNHE REDEETDLQD GRSNKQSAVY IDDSEISELL DKVLLGTWCR 240 NEPAPSCIGY TDLPSGPSLG KLEETNKSGG GKSRVKKQGN KKGVVDLRTL LILCAQAVSS 300 DDHVSANELL KQIKQHASPL GDGTQRLAHC FANALEARLA GTGTQIYTAL SHKRTSAADM 360 VKAYQMYISA CPFKKLSMIF ANHTILQLAK EVETLHIIDF GIRYGFQWPA FIYRLSKQPG 420 GPPKLRITGI ELPQPGFRPA ERVQETGLRL ARYCDRFNVP FEFNAIAQKW ETIKIEDLKI 480 KENELLVANA MFRFQNLLDE TVVVNSPRDA VLKLIRKANP AIFLHATVNG SYNAPFFVTR 540 FREALFHYST LFDVLDTNVA REDPMRLMFE REFFGRQVMN IVACEGSERV ERPETYKQWQ 600 VRNMRAGFKQ LPLDKHLINK LRCKLKGVYH SDFMLLEDGN YMLQGWKGRV VYASSCWVPA 660 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-52 | 270 | 659 | 1 | 379 | Protein SCARECROW |
5b3h_D | 3e-52 | 270 | 659 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G062200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028192193.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | I1LQP5 | 0.0 | I1LQP5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G06670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G062200.1.p |
Entrez Gene | 100815586 |
Publications ? help Back to Top | |||
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