PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G062100.3.p
Common NameGLYMA_12G062100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 648aa    MW: 73674.8 Da    PI: 5.7006
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G062100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.33.3e-1112706441373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl c +av ++d ++a++lL+++++++sp gd+ qRla+yf+++L+arl++ ++++    +  ++++++ se l+a+++fs  sP+
  Glyma.12G062100.3.p 270 LRNLLLMCSQAVYASDIRAANELLKQIRQHSSPIGDASQRLAHYFANGLEARLVGDGTSTQGMYTFLSSKNNTFSELLKAYQVFSSSSPF 359
                          689****************************************************888888888888888888***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           kf++l  N +I++a++++e+vHiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g   +e++eetg+ La+++++ +vpfe+
  Glyma.12G062100.3.p 360 KKFAYLFENTMIMKAAASAETVHIIDFGILHGFQWPMLIRLLSNREGGPPKLRITGIEFPQPGfrPTEKIEETGRHLANYCKRYNVPFEY 449
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrllde.svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          n++ ++++e+++le+L++ ++E +aV ++ + ++llde + +++s+r++vL+l+++++P++++++  + ++n++ F +rf eal +ysa+
  Glyma.12G062100.3.p 450 NAISSRNWETIQLEALKIASNELVAVYCHQRFENLLDEcTIEVNSPRNAVLHLIRKINPDIFTHSITNGSYNAPFFTTRFREALFHYSAI 539
                          **9999******************************984567777********************************************* PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                           d  ++ ++re+e r +vErel grei+nv+aceg++r+er et+++W+ r ++aGFk++pl+e+ +++ ++ l++++ d + ++e++++
  Glyma.12G062100.3.p 540 SDKNDTVISRENERRLMVERELYGREIMNVIACEGSDRIERPETYKRWQVRNMKAGFKQLPLNEELMAKFRSKLKEYHRD-FVLDENNNW 628
                          ******************************************************************************66.********* PP

                 GRAS 358 lvlgWkdrpLvsvSaW 373
                          +++gWk+r L++ S+W
  Glyma.12G062100.3.p 629 MLQGWKGRILFASSCW 644
                          **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.055244626IPR005202Transcription factor GRAS
PfamPF035141.2E-108270644IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MESNFPGAYH LFGEDQGIPY LSDSLGFPTM DPSSPEDNDF SETVKFISQI LMEENVDQRP  60
FYDSLTLRVT EKSFYDALTG NQPPFVLCSE AETNTITSNN SGSNFLNENS LTVSDRVSVL  120
DSSIAKLLAQ NISIEVDSVS KFRRGLEEAT KFLPPEPKLV TGLDLYREQA INSSGDTSYR  180
LNSRKNHGCE VRDTREEEEE EGGRSNKQSA LSLVDETDLS DAFDQVLLHE ENLWNEHTCL  240
QSEAEKVEGP NGGKGGSDKK VRKKKKTVDL RNLLLMCSQA VYASDIRAAN ELLKQIRQHS  300
SPIGDASQRL AHYFANGLEA RLVGDGTSTQ GMYTFLSSKN NTFSELLKAY QVFSSSSPFK  360
KFAYLFENTM IMKAAASAET VHIIDFGILH GFQWPMLIRL LSNREGGPPK LRITGIEFPQ  420
PGFRPTEKIE ETGRHLANYC KRYNVPFEYN AISSRNWETI QLEALKIASN ELVAVYCHQR  480
FENLLDECTI EVNSPRNAVL HLIRKINPDI FTHSITNGSY NAPFFTTRFR EALFHYSAIS  540
DKNDTVISRE NERRLMVERE LYGREIMNVI ACEGSDRIER PETYKRWQVR NMKAGFKQLP  600
LNEELMAKFR SKLKEYHRDF VLDENNNWML QGWKGRILFA SSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-5227764625379Protein SCARECROW
5b3h_D5e-5227764625379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217510.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G062100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192342.10.0scarecrow-like protein 14
TrEMBLA0A0R0HBH00.0A0A0R0HBH0_SOYBN; Uncharacterized protein
STRINGGLYMA12G06655.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein