PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G062000.1.p | ||||||||
Common Name | GLYMA_12G062000, LOC100809160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 681aa MW: 77290.9 Da PI: 5.3022 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 369.9 | 3.3e-113 | 308 | 677 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL+ c + v ++d+++a++lL+++++++sp+gd++qRla+yf+++L+arl++ +++++ l++++++ +e l+a++ f vsP+ Glyma.12G062000.1.p 308 LRNLLMMCSQSVYANDKRAANELLEQIRQHSSPSGDALQRLAHYFANGLEARLVG--EGMFSFLKSKRST---AAEFLKAHQDFLSVSPF 392 689***************************************************9..9999999999888...9**************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 kf+++ aN++I++a+ ++e+vHiiDf+i++G+QWp L++ L++R++gpp+lRiTg++ p++g +e++eetg rLa++ ++ +pfe+ Glyma.12G062000.1.p 393 KKFTYFFANKMIMKAAVKAETVHIIDFGIQYGFQWPMLIKFLSNREGGPPKLRITGIDFPQPGfrPTEKIEETGCRLANYSKRYSIPFEY 482 **************************************************************9*************************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 n+++++++e++++e+L+++++E +aVn+ ++ ++l+de+ +++s+r++vL+l+++++P++++ + + +n++ F +rf eal ++s+++ Glyma.12G062000.1.p 483 NAIASRNWETIQVEALNIETNELVAVNSLMKFENLMDETIEVDSPRNAVLHLIRKINPHIFTQCIVNGTYNAPFFTTRFREALFHFSTIY 572 **9999************************************************************************************ PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d ++ +pre+e+r+ +Ere+lgre++nv+aceg+er+er et+++W++r ++aGFk++pl+e+ ++ + lrk + + + ++e+++++ Glyma.12G062000.1.p 573 DLCDTVIPRENEWRMLIEREVLGREAMNVIACEGSERVERPETYKQWQARNMKAGFKQLPLNEELLAKFRNELRKSYHRDFVLDEDKNWM 662 *****************************************************************************999********** PP GRAS 359 vlgWkdrpLvsvSaW 373 ++gWk+r L++ ++W Glyma.12G062000.1.p 663 LQGWKGRILYASTCW 677 *************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.668 | 282 | 658 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-110 | 308 | 677 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MEANFPRRAH QFGEEEESIL YVSDSLGFAA TDPSLRDPSL EDNDFSETAK FINQILMEDN 60 VEQMPFYDSL NLQVTEKSFY NALTGNIPLS PNQHPLVLSP QAETTPTTSN SSNNSNHNFL 120 DENSRELNPS PDSVSVLAFQ FNPNSLSQPP SVTVNHGLSN LDSSTAKLLA HNIFNDADSL 180 SQFRRGLEEA TRFLPPGPKL VAGLDSKGEE PINTLGENSY GSKGRKNHER EDIDTREEEE 240 RRSNKQSALS LVDESDLSDA FDRVVLLSVE NVCNEHCSLQ SETVKAVEPG GVKGRPKNQA 300 TNKETVDLRN LLMMCSQSVY ANDKRAANEL LEQIRQHSSP SGDALQRLAH YFANGLEARL 360 VGEGMFSFLK SKRSTAAEFL KAHQDFLSVS PFKKFTYFFA NKMIMKAAVK AETVHIIDFG 420 IQYGFQWPML IKFLSNREGG PPKLRITGID FPQPGFRPTE KIEETGCRLA NYSKRYSIPF 480 EYNAIASRNW ETIQVEALNI ETNELVAVNS LMKFENLMDE TIEVDSPRNA VLHLIRKINP 540 HIFTQCIVNG TYNAPFFTTR FREALFHFST IYDLCDTVIP RENEWRMLIE REVLGREAMN 600 VIACEGSERV ERPETYKQWQ ARNMKAGFKQ LPLNEELLAK FRNELRKSYH RDFVLDEDKN 660 WMLQGWKGRI LYASTCWVPA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-50 | 291 | 679 | 1 | 379 | Protein SCARECROW |
5b3h_D | 2e-50 | 291 | 679 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.23036 | 0.0 | hypocotyl| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G062000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028193524.1 | 0.0 | scarecrow-like protein 14 isoform X1 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | I1LQP3 | 0.0 | I1LQP3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G06640.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 | Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G062000.1.p |
Entrez Gene | 100809160 |
Publications ? help Back to Top | |||
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