PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G061900.1.p
Common NameGLYMA_12G061900, LOC100813449
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 688aa    MW: 77367.7 Da    PI: 5.9417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G061900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.42.8e-1143196843373
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lL++cA+av+s d++ a+++L+++++++sp gd +qRla+yf+ +L++rla    ++ k ++ +++s    ++ l+a++++  +sP+l+
  Glyma.12G061900.1.p 319 TLLIQCAQAVASFDQRTANETLKQIRQHSSPFGDGLQRLAHYFADGLEKRLAA---GTPKFISFQSAS---AADMLKAYRVYISASPFLR 402
                          69**************************************************9...555556666666...899**************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          +s+++aN++Il+ +++e+ +HiiDf+is+G+QWp+L+q L++Rp+gpp+l +Tg++ p++g   +e++eetg+ L+k+++++gvpfe+n 
  Glyma.12G061900.1.p 403 MSNFLANRTILKLAQNESSLHIIDFGISYGFQWPCLIQRLSERPGGPPKLLMTGIDLPQPGfrPAERVEETGRWLEKYCKRFGVPFEYNC 492
                          ************************************************************9***************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           +a+++e+++le+L++++ E+++Vn+ ++l++l de+v+ + +rd++L+l+++++P+++ +   +  +n++ F++rf eal ++s+lfd+
  Glyma.12G061900.1.p 493 -LAQKWETIRLEDLKIDRSEVTVVNCLYRLKNLSDETVTANCPRDALLRLIRRINPNIFMHGVVNGTYNAPFFVTRFREALFHFSSLFDM 581
                          .6**************************************************************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          +e+++pre+  r ++E+ ++gr++ nv+acegaer+er et+++W+ r ++aGFk++pl  + ++ +k +++k + + + v+e+ +++++
  Glyma.12G061900.1.p 582 FEVNVPREDPSRLMIEKGVFGRDAINVIACEGAERVERPETYKQWQVRNQRAGFKQLPLAPEHVNRVKEMVKKEHHKDFVVDEDGKWVLQ 671
                          ***************************************************************************888************ PP

                 GRAS 361 gWkdrpLvsvSaW 373
                          gWk+r L++vS+W
  Glyma.12G061900.1.p 672 GWKGRILFAVSSW 684
                          ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.69291665IPR005202Transcription factor GRAS
PfamPF035149.8E-112319684IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MLSTDSLLEN FPGSVNGFIF ENGPVSVFSN QNPASGFEVD DSVSPSESAT DSGPSSGASS  60
NREHVESTKH SNPILRYISD ILMDEEDDLE RKPCMLQDCL RLQAAEKSFY DALVRSYPSS  120
PRQFDDNPDQ DDNFGGTTSS ESFSSYTTDN SCESDWFNGA SDFDSSFIQR SLIYSPEHAY  180
VAPDPFRETQ AGVHFSNGAW NLIHPQNKPR VIEDGVMQGS VTATGLREKR SYLMNDMSHE  240
EERSNKLSSV YSDDSEPSSM FDEVLLCKDG KSPSIFYAGR EPSPSQIADS GGSNGKKTRS  300
KRGSNKGTRA SVTTVDLWTL LIQCAQAVAS FDQRTANETL KQIRQHSSPF GDGLQRLAHY  360
FADGLEKRLA AGTPKFISFQ SASAADMLKA YRVYISASPF LRMSNFLANR TILKLAQNES  420
SLHIIDFGIS YGFQWPCLIQ RLSERPGGPP KLLMTGIDLP QPGFRPAERV EETGRWLEKY  480
CKRFGVPFEY NCLAQKWETI RLEDLKIDRS EVTVVNCLYR LKNLSDETVT ANCPRDALLR  540
LIRRINPNIF MHGVVNGTYN APFFVTRFRE ALFHFSSLFD MFEVNVPRED PSRLMIEKGV  600
FGRDAINVIA CEGAERVERP ETYKQWQVRN QRAGFKQLPL APEHVNRVKE MVKKEHHKDF  660
VVDEDGKWVL QGWKGRILFA VSSWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4732368625380Protein SCARECROW
5b3h_A4e-4732368624379Protein SCARECROW
5b3h_D4e-4732368624379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.184680.0root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G061900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592195.20.0uncharacterized protein LOC100815586
SwissprotQ9XE581e-177SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0B2RII60.0A0A0B2RII6_GLYSO; Scarecrow-like protein 14
TrEMBLK7LTB40.0K7LTB4_SOYBN; Uncharacterized protein
STRINGGLYMA12G06630.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-173SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]