PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G057900.1.p
Common NameGLYMA_12G057900, LOC100786151
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 337aa    MW: 37602.6 Da    PI: 5.0682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G057900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.3e-142269148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Glyma.12G057900.1.p 22 KGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 69
                         678*******************************************97 PP
2Myb_DNA-binding51.91.8e-1675118146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++++E+el+++++ +lG++ W+ Ia++++ gRt++++k++w++
  Glyma.12G057900.1.p  75 RGAFSQQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 118
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0891769IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-231772IPR009057Homeodomain-like
SuperFamilySSF466892.3E-2720116IPR009057Homeodomain-like
SMARTSM007172.4E-92171IPR001005SANT/Myb domain
PfamPF002491.3E-122269IPR001005SANT/Myb domain
CDDcd001673.74E-82569No hitNo description
PROSITE profilePS5129425.72370124IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.7E-2673125IPR009057Homeodomain-like
SMARTSM007176.8E-1674122IPR001005SANT/Myb domain
PfamPF002494.2E-1575118IPR001005SANT/Myb domain
CDDcd001671.55E-1177117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MRKPEVSGNN NNNNNINNKL RKGLWSPEED DKLMNYMLNS GQGCWSDVAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSQ QEEELIIHLH SLLGNRWSQI AARLPGRTDN EIKNFWNSTI  120
KKRLKNMSSN TSPNGSESSY EPNNRDLNMA GFTTSNTQDQ QHADFMPMFN SSSQSPSMHA  180
MVLNSIIDRL PMLEHGLNMP CSGGFFNSTG PCFSSSQSGV DNKGIYLENG GVFGSVNIGA  240
EGDVYVPPLE SVSTTSDHNL KVESTCNTDT NNSYFDDINS ILLNNCNINS NNKRAENRAG  300
GVENLFQEEL TIGEWDLEEL MKDVSSFPFL DFSNIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281612421128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.47571e-116root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G057900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539482.10.0transcription factor MYB46
RefseqXP_028193470.10.0transcription factor MYB46-like
TrEMBLA0A0R4J4P20.0A0A0R4J4P2_SOYBN; Uncharacterized protein
TrEMBLA0A445HLK80.0A0A445HLK8_GLYSO; Transcription factor MYB83
STRINGGLYMA12G06180.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.18e-64myb domain protein 46