PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G056300.1.p | ||||||||
Common Name | GLYMA_12G056300, LOC100788471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 554aa MW: 61370.2 Da PI: 6.6209 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.4e-15 | 163 | 222 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Glyma.12G056300.1.p 163 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 222 57*******************666664477446*************************98 PP | |||||||
2 | AP2 | 47.1 | 6.1e-15 | 267 | 316 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Glyma.12G056300.1.p 267 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 316 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.10E-22 | 163 | 232 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-17 | 163 | 232 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.2E-12 | 163 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.256 | 164 | 230 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.8E-30 | 164 | 236 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-16 | 164 | 231 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 165 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-18 | 265 | 326 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.17E-24 | 265 | 326 | No hit | No description |
PROSITE profile | PS51032 | 19.375 | 266 | 324 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.6E-33 | 266 | 330 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-18 | 266 | 325 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-9 | 267 | 316 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 306 | 326 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MNNNWLSFPL SPTHSSLPAH DLQATQYHQF SLGLVNENMD NPFQNHDWNL INTHSSNEIP 60 KVADFLGVSK SENQSDLAAL NEIHSNDSDY LFTNNSLVPM QNPVLDTPSN EYQENANSNL 120 QSLTLSMGSG KDSTCETSGE NSTNTTVEVA PRRTLDTFGQ RTSIYRGVTR HRWTGRYEAH 180 LWDNSCRREG QSRKGRQVYL GGYDKEEKAA RAYDLAALKY WGTSTTTNFP ISNYEKELDE 240 MKHMTRQEFV AAIRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE 300 EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KAILESNTLP IGGGAAKRLK EAQALESSRK 360 REEMIALGSS STFQYGTSAS SSRLHAYPLM QHHHQFEQPQ PLLTLQNHDI SSSHFSHQQD 420 PLHHQGYIQT QLQLHQQSGA SSYSFQNNAQ FYNGYLQNHP ALLQGMMNMG SSSSSSSVLE 480 NNNSNNNNNN VGGFVGSGFG MASNATAGNT VGTAEELGLV KVDYDMPAGG YGGWSAADSM 540 QTSNGGVFTM WND* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.34269 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Accumulates in the basal embryo region that gives rise to hypocotyl, root, and root stem cells. Expressed in the root meristem throughout embryo development. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:20190735}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, flowers, and siliques. Also detected at low levels in leaves. In roots, specifically detected in the distal root meristem, including the QC. This tissue specificity is regulated by auxin gradient and depends on PIN proteins. {ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:15988559, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G056300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU677381 | 0.0 | EU677381.1 Glycine max PLETHORA 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006592171.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 isoform X1 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | I1LQI0 | 0.0 | I1LQI0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G06010.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 0.0 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G056300.1.p |
Entrez Gene | 100788471 |